BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329500
Length=705
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21000.1 | Symbols: ATACA6, ACA6 | alpha carbonic anhydrase ... 1081 0.0
AT4G20990.1 | Symbols: ATACA4, ACA4 | alpha carbonic anhydrase ... 632 1e-180
> AT4G21000.1 | Symbols: ATACA6, ACA6 | alpha carbonic anhydrase
6 | chr4:11222529-11223756 FORWARD LENGTH=783
Length=783
Score = 1081 bits (585), Expect = 0.0
Identities = 668/708 (94%), Gaps = 6/708 (1%)
Strand=Plus/Plus
Query 1 ATGGATCCCAACACAAAAACAattttcttttttgtagtgtttttcatggatttatttttt 60
|||||| ||||||||||||||||||| |||||||||||||| ||||| |||||| ||||
Sbjct 1 ATGGATGCCAACACAAAAACAATTTTATTTTTTGTAGTGTTCTTCATCGATTTA-TTTTC 59
Query 61 ccc-aatattttACTCGTCTATGCTCGTGAAATCGGCAACAAACCACTATTTACATACAA 119
||| ||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 60 CCCTAATATTTTATTCGTTTATGCTCGTGAAATCGGCAACAAACCGCTATTTACATACAA 119
Query 120 ACAAAAAACAGAAAAAGGACCAGCGGAATGGGGCAAATTAAACCCTCAATGGAAAGTTTG 179
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 120 ACAAAAAACAGAGAAAGGACCAGCGGAATGGGGCAAATTAGACCCTCAATGGAAAGTTTG 179
Query 180 TAGCACGGGAAAATTTCAATCTCCGATTGATCTCACAGACGAAAGAGTCAGTCTTATTCA 239
|||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 180 TAGCACCGGAAAAATTCAATCTCCGATTGATCTCACTGACGAAAGAGTCAGTCTTATTCA 239
Query 240 TGACCAAGCCTTGAGCAAACATTACAAACCAGCTTTGGCTGTTATTCAAAGTAGAGGACA 299
||| ||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 240 TGATCAAGCCTTGAGTAAACATTACAAACCAGCTTCGGCTGTAATTCAAAGTAGAGGACA 299
Query 300 TGACGTTATGGTATCGTGGAAAGAAGATGCAGGAAAAATAACAATACATCAAACGGATTA 359
||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 300 TGACGTTATGGTATCGTGGAAAGGAGATGGTGGGAAAATAACAATACATCAAACGGATTA 359
Query 360 TAAATTGGTGCAGTGCCATTGGCATTCACCGTCTGAGCATACCATTAACGGAACTAGTTA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 TAAATTGGTGCAGTGCCATTGGCATTCACCGTCTGAGCATACCATTAACGGAACTAGCTA 419
Query 420 CGACCTAGAGCTTCACATGGTTCACACGAGTGCTAGTGGCAAAACCGCAGTGGTTGGAGT 479
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 420 TGACCTAGAGCTTCACATGGTTCACACGAGTGCTAGTGGCAAAACCACTGTGGTTGGAGT 479
Query 480 TCTTTATAAATTAGGTGAACCTGATGAATTCCTCACAAAGCTACTAAATGGAATAAAAGG 539
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 480 TCTTTATAAATTAGGTGAACCTGATGAATTCCTCACAAAGATACTAAATGGAATAAAAGG 539
Query 540 AGTAGGaaaaaaaGAGAT-GAATCTAGGAATTGTGGATCCTCGAGATATTAGATTTGAAA 598
|||||| ||||||||||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct 540 AGTAGGGAAAAAAGAGATAGA-TCTAGGAATCGTGGATCCTCGAGATATTAGATTTGAAA 598
Query 599 CCAACAACTTCTATAGATACATTGGCTCTCTCACTATTCCTCCATGCACCGAAGGCGTTA 658
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CCAACAATTTCTATAGATACATTGGCTCTCTCACTATTCCTCCATGCACCGAAGGCGTTA 658
Query 659 TTTGGACTGTCGAGAAAAGGGTATTGTATTTTTC--GTTTCAGTTATA 704
||||||| ||| ||||||||||||| ||||||| ||||| ||||||
Sbjct 659 TTTGGACCGTCCAGAAAAGGGTATTATATTTTTTTTGTTTCTGTTATA 706
> AT4G20990.1 | Symbols: ATACA4, ACA4 | alpha carbonic anhydrase
4 | chr4:11219772-11221126 FORWARD LENGTH=804
Length=804
Score = 632 bits (342), Expect = 1e-180
Identities = 578/690 (84%), Gaps = 23/690 (3%)
Strand=Plus/Plus
Query 1 ATGGATCCCAACACAAAAACAattttcttttttg-tagtgtttttcatggatttattttt 59
|||||| ||||| |||||||||||||||| | | || ||| |||||| || || | ||
Sbjct 1 ATGGATACCAACGCAAAAACAATTTTCTTCATGGCTA-TGTGTTTCATCTATCTA-TCTT 58
Query 60 tccc-aatattttACTCGTCT-ATGCTCGTGAAATCGGCAAC-AAACCACTATTTACATA 116
|||| ||||||| || || || || || |||| ||| | || ||| | | |||||| ||
Sbjct 59 TCCCTAATATTTCACACG-CTCAT--TC-TGAAGTCGACGACGAAA-CTCCATTTACTTA 113
Query 117 CAAACAAAAAACAGAAAAAGGACCAGCGGAATGGGGCAAATTAAACCCTCAATGGAAAGT 176
| |||||||||| ||||| ||||||| || |||||||||| |||| || || ||||||||
Sbjct 114 CGAACAAAAAACGGAAAAGGGACCAGAGGGATGGGGCAAAATAAATCCGCACTGGAAAGT 173
Query 177 TTGTAGCACGGGAAAATTTCAATCTCCGATTGATCTCAC-AGACGAAAGAGTCAGTCTTA 235
||||| ||| |||| || |||||| ||||| ||||| || | ||||||||||||||||||
Sbjct 174 TTGTAACACCGGAAGATATCAATCCCCGATCGATCTTACTA-ACGAAAGAGTCAGTCTTA 232
Query 236 TTCATGACCAAGCCTTGAGCAA-ACATTACAAACCAGCTTTGGCTGTTATT-CAAAGTAG 293
||||||| ||||| | || ||| ||| || ||||||||| |||||| ||| |||| ||
Sbjct 233 TTCATGATCAAGCATGGA-CAAGACAATATAAACCAGCTCCGGCTGTAATTACAAA-CAG 290
Query 294 AGGACATGACGTTATGGTATCGTGGAAAGAAGATGCAGGAAAAATAACAATACATCAAAC 353
||| |||||| |||||||||| ||||||| |||||| || || || ||||||| ||||
Sbjct 291 AGGCCATGACATTATGGTATCATGGAAAGGAGATGCTGGGAAGATGACAATACGGAAAAC 350
Query 354 GGATTATAAATTGGTGCAGTGCCATTGGCATTCACCGTCTGAGCATACCATTAACGGAAC 413
||||| ||| |||||||| ||||||||||||||||| |||||||||||| ||||||||||
Sbjct 351 GGATTTTAATTTGGTGCAATGCCATTGGCATTCACCTTCTGAGCATACCGTTAACGGAAC 410
Query 414 TAGTTACGACCTAGAGCTTCACATGGTTCACACGAGTGCTA-GTGGCAAAACCGCAGTGG 472
||| ||||||||||||||||||||||||||||||||||| | | |||| ||| || ||
Sbjct 411 TAGGTACGACCTAGAGCTTCACATGGTTCACACGAGTGC-ACGAGGCAGAACTGCGGTTA 469
Query 473 TTGGAGTTCTTTATAAATTAGGTGAACCTGATGAATTCCTCACAAAGCTACTAAATGGAA 532
| ||||||||||| |||||||| |||||| ||||||||||||| ||||||||||||||||
Sbjct 470 TCGGAGTTCTTTACAAATTAGGCGAACCTAATGAATTCCTCACCAAGCTACTAAATGGAA 529
Query 533 TAAAAGGAGTAGGaaaaaaaGAGATGAATCTAGGAATTG-TGGATCCTCGAGATATTAGA 591
|||||| ||| ||||| |||||||| |||||||| || | | ||||| ||||| |||||
Sbjct 530 TAAAAGCAGTGGGAAATAAAGAGATAAATCTAGGGAT-GATTGATCCACGAGAGATTAGG 588
Query 592 TTTGAAACCA-ACAACTTCTATAGATACATTGGCTCTCTCACTATTCCTCCATGCACCGA 650
||| |||| | | || ||||||||||||||||||||||||||| ||||||| ||||| ||
Sbjct 589 TTTCAAACAAGAAAA-TTCTATAGATACATTGGCTCTCTCACTGTTCCTCCTTGCACTGA 647
Query 651 AGGCGTTATTTGGACTGTCGAGAAAAGGGT 680
|||||| ||||||||||||| ||||||||
Sbjct 648 AGGCGTCATTTGGACTGTCGTCAAAAGGGT 677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34159219960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5