BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329501
Length=804
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20990.1 | Symbols: ATACA4, ACA4 | alpha carbonic anhydrase ... 1280 0.0
AT4G21000.1 | Symbols: ATACA6, ACA6 | alpha carbonic anhydrase ... 665 0.0
> AT4G20990.1 | Symbols: ATACA4, ACA4 | alpha carbonic anhydrase
4 | chr4:11219772-11221126 FORWARD LENGTH=804
Length=804
Score = 1280 bits (693), Expect = 0.0
Identities = 767/804 (95%), Gaps = 0/804 (0%)
Strand=Plus/Plus
Query 1 ATGGATCCCAACGCGAAAACAATTTTCTTCTTGGCTATGTTTTTCATCTATTTATCTTTC 60
|||||| ||||||| ||||||||||||||| ||||||||| |||||||||| ||||||||
Sbjct 1 ATGGATACCAACGCAAAAACAATTTTCTTCATGGCTATGTGTTTCATCTATCTATCTTTC 60
Query 61 CCTAATATCTCACTCGCACATACGGAAGTTGACGACGAAACTCCATTTACATACGAACAA 120
|||||||| |||| ||| ||| | ||||| |||||||||||||||||||| |||||||||
Sbjct 61 CCTAATATTTCACACGCTCATTCTGAAGTCGACGACGAAACTCCATTTACTTACGAACAA 120
Query 121 AAAACAGAAAAAGGACCCGAGGGATGGGGAAAAATAAATCCGCAATGGAAAGTCTGTAAC 180
||||| ||||| ||||| ||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 121 AAAACGGAAAAGGGACCAGAGGGATGGGGCAAAATAAATCCGCACTGGAAAGTTTGTAAC 180
Query 181 ACCGGAAGATATCAATCGCCGATCGATCTTACTAACGAAAGAGTCAGTCTTATTCATGAT 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACCGGAAGATATCAATCCCCGATCGATCTTACTAACGAAAGAGTCAGTCTTATTCATGAT 240
Query 241 CAAGCATGGACAAGACAATATAAACCAGCTCCGGCTGTAATTACAAATAGAGGCCATGAC 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 CAAGCATGGACAAGACAATATAAACCAGCTCCGGCTGTAATTACAAACAGAGGCCATGAC 300
Query 301 ATTATGGTATCATGGAAAGGAGATGCTGGGAAAATAACAATACGTAAAACGGATTTTAAA 360
|||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 301 ATTATGGTATCATGGAAAGGAGATGCTGGGAAGATGACAATACGGAAAACGGATTTTAAT 360
Query 361 TTGGTGCAATGCCATTGGCATTCACCCTCTGAGCATACCGTTAACGGAACTAGCTACGAC 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 361 TTGGTGCAATGCCATTGGCATTCACCTTCTGAGCATACCGTTAACGGAACTAGGTACGAC 420
Query 421 CTAGAGCTTCACATGGTTCACACGAGTGCACGAGGCAGAACTGCGGTTATCGGAGTTCTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTAGAGCTTCACATGGTTCACACGAGTGCACGAGGCAGAACTGCGGTTATCGGAGTTCTT 480
Query 481 TACAGATTAGGGGAACCTAATGAATTCCTCACAAAGCTACTAAATGGAATAAAAGCAGTG 540
|||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 TACAAATTAGGCGAACCTAATGAATTCCTCACCAAGCTACTAAATGGAATAAAAGCAGTG 540
Query 541 GGAAATAAAGAGATAAATCTAGGGATGATTGATCCTCGAGAGATTAGGTTTCAAACCAGA 600
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 541 GGAAATAAAGAGATAAATCTAGGGATGATTGATCCACGAGAGATTAGGTTTCAAACAAGA 600
Query 601 AAATTCTATAGATACATTGGCTCTCTCACTGTTCCTCCTTGCACTGAAGGCGTTATTTGG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 AAATTCTATAGATACATTGGCTCTCTCACTGTTCCTCCTTGCACTGAAGGCGTCATTTGG 660
Query 661 ACTGTCGTCAAAAGGGTGAACACAATATCAACGGAGCAAATTGCAGCTCTGAGGGAAGCC 720
||||||||||||||||||||||||||||||| |||||||||| ||||||| ||| |||||
Sbjct 661 ACTGTCGTCAAAAGGGTGAACACAATATCAATGGAGCAAATTACAGCTCTTAGGCAAGCC 720
Query 721 GTTGACGATGGGTTTGAGACAAATTCAAGACCGGTTCAAGACTCAAAGGGAAGATCAGTT 780
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GTTGACGATGGATTTGAGACAAATTCAAGACCGGTTCAAGACTCAAAGGGAAGATCAGTT 780
Query 781 TGGTTCTATGATCCAAATGTTTGA 804
||||||||||||||||||||||||
Sbjct 781 TGGTTCTATGATCCAAATGTTTGA 804
> AT4G21000.1 | Symbols: ATACA6, ACA6 | alpha carbonic anhydrase
6 | chr4:11222529-11223756 FORWARD LENGTH=783
Length=783
Score = 665 bits (360), Expect = 0.0
Identities = 584/690 (85%), Gaps = 23/690 (3%)
Strand=Plus/Plus
Query 1 ATGGATCCCAACGCGAAAACAATTTTCTTCTTGGCTA-TGTTTTTCATCTATTTATCTTT 59
|||||| ||||| | ||||||||||| || || | || |||| |||||| |||||| |||
Sbjct 1 ATGGATGCCAACACAAAAACAATTTTATTTTTTG-TAGTGTTCTTCATCGATTTAT-TTT 58
Query 60 -CCCTAATATCTCACTCGCACAT--ACG-GAAGTTGACGACGAAA-CTCCATTTACATAC 114
||||||||| | | ||| || || ||| | | | || ||| | | ||||||||||
Sbjct 59 CCCCTAATATTTTATTCGTTTATGCTCGTGAAATCGGCAAC-AAACCGCTATTTACATAC 117
Query 115 GAACAAAAAACAGAAAAAGGACCCGAGGGATGGGGAAAAATAAATCCGCAATGGAAAGTC 174
||||||||||||| |||||||| | || |||||| ||| || | || |||||||||||
Sbjct 118 AAACAAAAAACAGAGAAAGGACCAGCGGAATGGGGCAAATTAGACCCTCAATGGAAAGTT 177
Query 175 TGTAACACCGG-AAGATATCAATCGCCGATCGATCTTACTAACGAAAGAGTCAGTCTTAT 233
|||| |||||| || || |||||| ||||| ||||| ||| |||||||||||||||||||
Sbjct 178 TGTAGCACCGGAAAAAT-TCAATCTCCGATTGATCTCACTGACGAAAGAGTCAGTCTTAT 236
Query 234 TCATGATCAAGCATGGA-CAAGACAATATAAACCAGCTCCGGCTGTAATTACAAA-TAGA 291
|||||||||||| | || || ||| || ||||||||| ||||||||||| |||| ||||
Sbjct 237 TCATGATCAAGCCTTGAGTAA-ACATTACAAACCAGCTTCGGCTGTAATT-CAAAGTAGA 294
Query 292 GGCCATGACATTATGGTATCATGGAAAGGAGATGCTGGGAAAATAACAATACGTAAAACG 351
|| |||||| |||||||||| ||||||||||||| ||||||||||||||||| | |||||
Sbjct 295 GGACATGACGTTATGGTATCGTGGAAAGGAGATGGTGGGAAAATAACAATACATCAAACG 354
Query 352 GATTTTAAATTGGTGCAATGCCATTGGCATTCACCCTCTGAGCATACCGTTAACGGAACT 411
|||| |||||||||||| ||||||||||||||||| |||||||||||| |||||||||||
Sbjct 355 GATTATAAATTGGTGCAGTGCCATTGGCATTCACCGTCTGAGCATACCATTAACGGAACT 414
Query 412 AGCTACGACCTAGAGCTTCACATGGTTCACACGAGTGC-ACGAGGCAGAACTGCGGTTAT 470
||||| |||||||||||||||||||||||||||||||| | | |||| ||| | || |
Sbjct 415 AGCTATGACCTAGAGCTTCACATGGTTCACACGAGTGCTA-GTGGCAAAACCACTGTGGT 473
Query 471 CGGAGTTCTTTACAGATTAGGGGAACCTAATGAATTCCTCACAAAGCTACTAAATGGAAT 530
||||||||||| | |||||| |||||| ||||||||||||||||| |||||||||||||
Sbjct 474 TGGAGTTCTTTATAAATTAGGTGAACCTGATGAATTCCTCACAAAGATACTAAATGGAAT 533
Query 531 AAAAGCAGT-GGGAAATAAAGAGATAAATCTAGGGAT-GATTGATCCTCGAGAGATTAGG 588
||||| ||| |||||| ||||||||| ||||||| || | | ||||||||||| |||||
Sbjct 534 AAAAGGAGTAGGGAAA-AAAGAGATAGATCTAGGAATCG-TGGATCCTCGAGATATTAGA 591
Query 589 TTTCAAACCAGAAAATT-CTATAGATACATTGGCTCTCTCACTGTTCCTCCTTGCACTGA 647
||| |||||| | |||| ||||||||||||||||||||||||| ||||||| ||||| ||
Sbjct 592 TTTGAAACCA-ACAATTTCTATAGATACATTGGCTCTCTCACTATTCCTCCATGCACCGA 650
Query 648 AGGCGTTATTTGGACTGTCGTCAAAAGGGT 677
||||||||||||||| ||| ||||||||
Sbjct 651 AGGCGTTATTTGGACCGTCCAGAAAAGGGT 680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39132400513
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5