BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg329503

Length=576
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G20970.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bin...   891    0.0  


> AT4G20970.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding 
superfamily protein | chr4:11215259-11216212 FORWARD 
LENGTH=573
Length=573

 Score =  891 bits (482),  Expect = 0.0
 Identities = 540/569 (95%), Gaps = 0/569 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGCCGAGCCATTCAAACACTGGTCAATCAAGATCTGTAGATCGCAAAACGATTGAG  60
            ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct  1    ATGGAGCCGAGCCATTCAAACACAGGTCAATCAAGATCTGTAGATCGCAAAACGGTTGAG  60

Query  61   AAAAATAGAAGGATGCAAATGAAATCTCTCTACTCAGAACTCATCTCTCTTCTTCCTCAT  120
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  61   AAAAATAGAAGGATGCAAATGAAGTCTCTCTACTCAGAACTCATCTCTCTTCTTCCTCAT  120

Query  121  CAGTCTTCTAGGGAGCCTTTAACACTACCTGATGAGCTAGATGAAGCTGCAAACTACATC  180
            || ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  121  CATTCTTCTACGGAGCCTTTAACACTACCTGATCAGCTAGATGAAGCTGCAAACTACATC  180

Query  181  AAGAAGCTACAAGTGAACGTGGAGAAAAAGAGAGAAAGGAAGAGGAAACTTGTTGCGACT  240
            ||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct  181  AAGAAGCTACAAGTGAACGTGGAGAAAAAGAGAGAAAGGAAAAGGAACCTCGTTGCGACT  240

Query  241  ACAACTTTTGAGAAATTGAATTCCGTCGGATCTTCATCGGTTTCTTCGAGTGTCGATGTC  300
            |||||||| |||||| |||||||||||||||||||||||||||| ||||| |||||||||
Sbjct  241  ACAACTTTGGAGAAACTGAATTCCGTCGGATCTTCATCGGTTTCGTCGAGCGTCGATGTC  300

Query  301  TCCGTGCCTAGAAGGCTCCCAAAAATTGAGATTCAAGAGACTGGTTCCATTTTTCACATC  360
            |||||||| |||| ||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct  301  TCCGTGCCAAGAAAGCTGCCAAAAATCGAGATTCAAGAAACTGGTTCCATTTTTCACATC  360

Query  361  TTTCTTGTGACAAGCTTGGAACACAAGTTTATGTTCTGTGAGATCGTTCGTCTTCTCACT  420
            ||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||| 
Sbjct  361  TTTCTTGTGACAAGCTTGGAACACAAGTTTATGTTTTGTGAGATCATTCGTGTTCTCACC  420

Query  421  GAAGAATTAGGAGCTGAGATCACTCATGCTGGATACTCCATTGTTAATGATGCTGTCTTC  480
            || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  421  GAGGAATTAGGAGCTGAGATCACTCATGCTGGATACTCCATTGTTGATGATGCTGTCTTC  480

Query  481  CACACCCTTCACTGCAAGGTGGAAGAATGTGATTATGGAGCTAGGAGCCAAATTCCTGAA  540
            |||||||||||||||||||||||||||   ||||||||||||||||| ||||||||||||
Sbjct  481  CACACCCTTCACTGCAAGGTGGAAGAACACGATTATGGAGCTAGGAGTCAAATTCCTGAA  540

Query  541  AGACTGGAGAAGTTTGTGAACAGTGTTCA  569
            |||||||||||| ||||||||||||||||
Sbjct  541  AGACTGGAGAAGATTGTGAACAGTGTTCA  569



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27679014997


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5