BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329506
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20930.1 | Symbols: | 6-phosphogluconate dehydrogenase fami... 953 0.0
> AT4G20930.1 | Symbols: | 6-phosphogluconate dehydrogenase family
protein | chr4:11198389-11201087 REVERSE LENGTH=1333
Length=1333
Score = 953 bits (516), Expect = 0.0
Identities = 554/573 (97%), Gaps = 0/573 (0%)
Strand=Plus/Plus
Query 547 AATTGGGAAAAGCCGGTCATGTTGGATGCTCCTGTCTCTGGAGGTGTTCTTGCTGCAGAA 606
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 523 AATTGGGAAAAGCCAGTCATGTTGGATGCTCCCGTCTCTGGAGGTGTTCTTGCTGCAGAA 582
Query 607 GCTGGTACACTTACTTTCATGGTTGGAGGTCCCAAAGATGCTTACGTAGCTGCTAGACCA 666
||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||
Sbjct 583 GCTGGTACACTTACTTTCATGGTTGGAGGTCCCGAAGATGCTTACTTAGCCGCTAGACCA 642
Query 667 ATACTTCATTCAATGGGTAGAACCTCCATCTACTGTGGTGGTTCAGGAAATGGCTCTGCT 726
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 643 ATACTTCAGTCAATGGGCAGAACCTCCATCTACTGTGGTGGTTCAGGAAATGGATCTGCC 702
Query 727 GCAAAGATTTGTAACAATTTGGCAATGGCTGTGAGTATGCTCGGCACTTCAGAAGCCTTA 786
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 703 GCAAAGATTTGTAACAATCTGGCAATGGCCGTGAGTATGCTCGGCACTTCAGAAGCCTTA 762
Query 787 GCTCTTGGTCAGTCACTTGGAATATCTGCGAGTACTTTAACAGAAGTGTTAAACACATCT 846
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 763 GCTCTTGGTCAGTCACTTGGAATATCTGCCAGTACTTTAACAGAAGTCTTAAACACATCT 822
Query 847 AGTGGCAGATGTTGGAGTAGCGACGCATACAATCCAGTTCCAGGAGTGATGAAAGGTGTG 906
|||||| | |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 823 AGTGGCCGTTGTTGGAGCAGTGACGCATACAATCCAGTTCCAGGAGTGATGAAAGGTGTG 882
Query 907 CCATCTTCAAGGGATTACAATGGCGGTTTCGCCTCCAAACTTATGGCTAAAGACCTAAAC 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 CCATCTTCAAGGGATTACAATGGCGGTTTCGCCTCCAAACTTATGGCTAAAGACCTAAAC 942
Query 967 CTCGCAGCAGCCTCAGCTGAAGAAGTTGGACACAAAAGCCCATTGATATCCAAAGCACAA 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 CTCGCAGCAGCCTCAGCTGAAGAAGTTGGACACAAAAGCCCATTGATATCCAAAGCACAA 1002
Query 1027 GAAATTTACAAGAAGATGTGCGAGGAAGGGCATGAAACGAAGGACTTCTCTTGTGTTTTC 1086
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1003 GAAATTTACAAGAAGATGTGCGAGGAAGGACATGAAACGAAGGACTTCTCTTGTGTTTTC 1062
Query 1087 AGACACTTTTACAATGGCAAAGATGAGGTCTGA 1119
||||||||||||||||| |||||||||||||||
Sbjct 1063 AGACACTTTTACAATGGGAAAGATGAGGTCTGA 1095
Score = 725 bits (392), Expect = 0.0
Identities = 447/473 (95%), Gaps = 5/473 (1%)
Strand=Plus/Plus
Query 1 ATGGCGATTCGCAGAGCGCAAACTCTACTTTGTCTTTCCAAATTCAAAACCAATTTCGTG 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 52 ATGGCGATTCGCAGAGCGCAAACTCTACTTTGTCTTTCTAAATTCAAAACCAATTTCGTG 111
Query 61 TTTGGGTCGCTCCACCGATTATTCTCTTCGTCGTCTCAAAATTCAAATCAATTCCAGAAT 120
| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 112 TCTGGGTCGCTCCACCG---GTTCTCTTCTTCGTCTCAAAATTCAAATCAATTCCAGAAT 168
Query 121 GTTGGTTTTATAGGACTTGGAAATATGGGA-TCTAGAATGGTGAATAATCTAGTTAAAGC 179
|||||||| ||||||||||||||||||||| || |||||||||||||||||| ||| |||
Sbjct 169 GTTGGTTTCATAGGACTTGGAAATATGGGATTC-AGAATGGTGAATAATCTAATTAGAGC 227
Query 180 TGGATATAAAGTTACCGTTCATGACATAAACCGTCATGTTATGAAGATGTTCACCGAAAT 239
|||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||
Sbjct 228 TGGATATAAAGTTACCGTTCATGACATAAACCGTGATGTTATGAAAATGTTCACTGAAAT 287
Query 240 GGGAGTCTCTGCTAGAGAAACTCCTTATCAAGTTGCACAAGATAGCGAAGTTGTGATTAC 299
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 288 GGGAGTCTCTTCTAGAGAAACTCCTTATGAAGTTGCACAAGATAGCGAAGTTGTGATTAC 347
Query 300 CATGTTGCCTTCTTCGTCTCACGTTATGGATGTGTACACAGGAACAAATGGGCTGCTTCT 359
||||||||||| || ||||| || ||||||||||||||||||||||||||| |||||||
Sbjct 348 AATGTTGCCTTCATCATCTCATGTGATGGATGTGTACACAGGAACAAATGGGTTGCTTCT 407
Query 360 TGGAGAAAATGCTATAAGACCTGCTTTGTTAATAGATTCATCCACTATTGATCCACAAAC 419
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 408 TGGAGAAAATGATATAAGACCTGCTTTGTTTATAGATTCATCCACTATTGATCCACAAAC 467
Query 420 AACTCGAAAAATCTCGCTTGCTGTTTCTAATTGTAATTTGAAAGAAAAGAGAG 472
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 468 AACTCGAAAAATCTCACTTGCTGTTTCTAATTGTAATTTGAAAGAAAAGAGAG 520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54869195685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5