BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329509
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20900.1 | Symbols: MS5, TDM1 | Tetratricopeptide repeat (TP... 961 0.0
AT5G44330.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 460 1e-128
> AT4G20900.1 | Symbols: MS5, TDM1 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:11184103-11185844 REVERSE
LENGTH=1353
Length=1353
Score = 961 bits (520), Expect = 0.0
Identities = 604/645 (94%), Gaps = 3/645 (0%)
Strand=Plus/Plus
Query 1 ATGTGTCCCTGCGAAGAGCGTCGTGCTCCACCTGGGGTTTACTATACTCCGCCGCCGGCG 60
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGTGTCCCTGCGTAGAGCGTCGTGCTCCACCTGGAGTTTACTATACTCCGCCGCCGGCG 60
Query 61 AGAACAAGT--T-ATGTGGCGGCGATGCCGTTGTCGGAGAGGAGAAGACCACCGTTTTCT 117
||||||||| | ||||||||||||||||| || |||||||||| |||||||||| ||||
Sbjct 61 AGAACAAGTGATCATGTGGCGGCGATGCCGATGACGGAGAGGAGGAGACCACCGTATTCT 120
Query 118 TGTTCGTCGTCGTCGGAGAAACGTGATCCGTTTCACATTGTTCACAAGGTTCCTTCTGGT 177
||||| ||||||||||||| |||||||||||||||||||||||| || ||||||||||||
Sbjct 121 TGTTCTTCGTCGTCGGAGAGACGTGATCCGTTTCACATTGTTCATAAAGTTCCTTCTGGT 180
Query 178 GATTCTCCTTACGTCAGAGCCAAACATGCGCAGTTGATAGATAAAGATCCGAATAGAGCT 237
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 181 GATTCTCCTTACGTCAGAGCCAAACACGCGCAGTTGATAGATAAAGATCCGAACAGAGCT 240
Query 238 ATATCATTGTTTTGGACTGCAATAAACGCTGGAGATCGAGTTGATAGTGCTTTGAAGGAC 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATATCATTGTTTTGGACTGCAATAAACGCTGGAGATCGAGTTGATAGTGCTTTGAAGGAT 300
Query 298 ATGGTAGTTGTAATGAAACAGTTAGACCGATCTGACGAAGGAATTGAAGCCATCAGATCC 357
|||| |||||||||||||| |||| |||||||| ||||| |||||||| || | ||||
Sbjct 301 ATGGCCGTTGTAATGAAACAATTAGGTCGATCTGATGAAGGGATTGAAGCTATTAAATCC 360
Query 358 TTTCGGTATCTCTGTTCTTTCGAGTCTCAAGACTCCATTGATAACTTGCTACTCGAACTC 417
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 361 TTTCGGTATCTCTGTTCTTTCGAGTCTCAAGACTCGATTGATAACTTGCTACTCGAGCTC 420
Query 418 TACAAAAAGTCAGGGAGGATTGAAGAAGAAGCTGAGTTACTTGAGCACAAGCTGAAAACA 477
||||| ||||||||||| |||||||||||||||| |||||||||||||| ||| |||||
Sbjct 421 TACAAGAAGTCAGGGAGAATTGAAGAAGAAGCTGTTTTACTTGAGCACAAACTGCAAACA 480
Query 478 CTCGAACAAGGAATGGGATTTGGAGGTAGAGTCATTAGAGCTAAAAGGGTTCAAGGAAAA 537
||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||
Sbjct 481 CTCGAACAAGGAATGGGATTTGGTGGTAGAGTCAGTAGAGCAAAAAGGGTTCAAGGAAAA 540
Query 538 CATGTTACAATGACTATCGAGCAAGAGAAAGCAAGGGTATTAGGGAACTTGGGCTGGGTT 597
||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 541 CATGTTATTATGACTATCGAGCAAGAGAAAGCAAGGATACTAGGGAACTTGGGCTGGGTT 600
Query 598 CATTTACAGTTACATAACTATGGAATTGCAGAGCAGCATTACAGG 642
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CATTTACAGTTACATAACTATGGAATTGCAGAGCAGCATTACAGG 645
Score = 833 bits (451), Expect = 0.0
Identities = 570/625 (91%), Gaps = 18/625 (3%)
Strand=Plus/Plus
Query 642 GAGAGCTTTGGGTTTGGAGCGAGACAAAAACAAACTGTGCAACCTTGCAATCTGCTTGAT 701
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 693 GAGAGCTTTGGGTTTGGAGCGAGACAAAAACAAACTCTGTAACCTTGCAATCTGCTTGAT 752
Query 702 GCGTATGGGTCGAATTCCTGAAGCTAAATCTCTTCTTGATGATGTAAGAGATTCTTCTAC 761
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| || |
Sbjct 753 GCGTATGAGTCGAATTCCTGAAGCTAAATCTCTGCTTGATGATGTAAGAGATTCTCCTGC 812
Query 762 AGAGAGTGAATGTGGAGATGAACCATTCACAAAGTCTTATGACCGAGCCGTTGAGATGTT 821
|||||||||||| ||||||||||||||| |||||||||||||||||||||| || |||||
Sbjct 813 AGAGAGTGAATGCGGAGATGAACCATTCGCAAAGTCTTATGACCGAGCCGTCGAAATGTT 872
Query 822 AGCAGACATAGAATCAAAAAATCCAGAAGCTGATCTTTCGGATAAGTTCTACGCGGGATG 881
|||||| |||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 873 AGCAGAAATAGAATCGAAAAAGCCAGAAGCTGATCTTTCGGAGAAGTTCTACGCGGGATG 932
Query 882 TTCATTTGCAGA-TGGGATGAAGGAAAACATAGCTCCTGGAATCGCAAACAAGAACTACT 940
|||||||| || | ||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 933 TTCATTTGT-GAATAGGATGAAGGAAAATATAGCTCCTGGAACCGCAAACAAGAACTACT 991
Query 941 C-GCATGTGTCTTCTTCTCCAGCATCTGTTG-GACCGAACTCTGCAGGTCTATATACACA 998
| | |||| ||||| |||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 992 CAG-ATGTTTCTTCGTCTCCAGCATCTGT-GAGACCGAACTCTGCAGGTCTATATACACA 1049
Query 999 ACCACGCGGTTGCAGAGCAGGGATGTATGAGGAAGAGACCAGAGGTGCAGCTCGAAAGCT 1058
||||||| | |||||| | | | ||| |||||||| |||||||| |||||||||||
Sbjct 1050 ACCACGCAGATGCAGATT-G---T-T-TGAAGAAGAGACGAGAGGTGCTGCTCGAAAGCT 1103
Query 1059 ACTGTTTGAGAAA-CCGA-AACCTTTTGGTTCTGAACAGATTAAGATCTTAAAGAGAGGA 1116
||| |||| |||| || | |||||||||| ||||||||||| ||||||||| ||||||||
Sbjct 1104 ACTATTTG-GAAAACC-ACAACCTTTTGGCTCTGAACAGATGAAGATCTTAGAGAGAGGA 1161
Query 1117 GAAGAAGAACCCCA-GACGCGAAAGAAACTGGACCCGAACATGATTCAATATCTCCATGA 1175
|||||||||||| | || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1162 GAAGAAGAACCC-ATGAAGCGAAAGAAACTGGACCAGAACATGATTCAATATCTCCATGA 1220
Query 1176 ATTCATCAAAGATACAGCAGATGGTCCgaagaatgaatctaagaaaagctgggcagatat 1235
|||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1221 ATTCGTCAAAGATACAGCAGATGGTCCGAAGAGTGAATCAAAGAAAAGCTGGGCAGATAT 1280
Query 1236 cgcagaagaggaagaagaagaagaa 1260
||||||||||||||||| |||||||
Sbjct 1281 CGCAGAAGAGGAAGAAGCAGAAGAA 1305
> AT5G44330.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:17857325-17859056 FORWARD LENGTH=1410
Length=1410
Score = 460 bits (249), Expect = 1e-128
Identities = 550/691 (80%), Gaps = 38/691 (5%)
Strand=Plus/Plus
Query 165 GGTTCCTTCTGGTGATTCTCCTTACGTCAGAGCCAAACATGCGCAGTTGATAGATAAAGA 224
||||| | |||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 147 GGTTCGTACTGGTGATTCTCCTTACGTCAGAGCCAAACATGCTCAGTTGGTTTCTAAAGA 206
Query 225 TCCGAATAGAGCTATATCATTGTTTTGGACTGCAATAAACGCTGGAGATCGAGTTGATAG 284
|||||| ||||||| || ||||||||| | || || || ||||||||| ||||||||||
Sbjct 207 CCCGAATCGAGCTATCTCGTTGTTTTGGGCGGCGATTAATGCTGGAGATAGAGTTGATAG 266
Query 285 TGCTTTGAAGGACATGGTAGTTGTAATGAAACAGTTAGA-CCGAT-CTGACGAAGGAATT 342
||| |||||||||||||||||||| | |||||||| || ||||| | || ||||||||
Sbjct 267 TGCATTGAAGGACATGGTAGTTGTTTTAAAACAGTT-GAACCGATTC-GATGAAGGAATC 324
Query 343 GAAGCCATCA-GATCCTTTCGGTATCTCTGTTCTTTCGAGTCTCAAGACTCCATTGATAA 401
||||| |||| | || ||||| |||||||| |||| || |||||||| || ||||||||
Sbjct 325 GAAGCTATCAAG-TCTTTTCGATATCTCTGCCCTTTTGAATCTCAAGATTCTATTGATAA 383
Query 402 CTTGCTACTCGAACTCTACAAAAAGTCAGGGAGGATTGA-AGAAGAAGCTGAGTTACTTG 460
|||| |||| |||||||||| ||||| ||||||||| | ||| | |||||| | ||||
Sbjct 384 CTTGTTACTTGAACTCTACATGAAGTCTGGGAGGATT-ACAGAGGTCGCTGAGCTGCTTG 442
Query 461 AGCACAAGCTGAAAACACTCGAACAAGG-AATGGGATT-TGGAGGTAG-AGTCATTAGAG 517
| ||||| |||| |||||| ||||||| || ||| ||| || || | ||| | ||
Sbjct 443 AACACAAACTGAGAACACTTGAACAAGACAAAC--ATTATGGTGGCAGGA-TCAAAATAG 499
Query 518 CTAAAAGG-GTTCA--AGGAAAACATGTTACAATGACTATCGAGCAAGAGAAAGCAAGGG 574
| ||||| | || |||| | | | |||| ||| |||||||||||||||||| ||
Sbjct 500 CGAAAAGAAGC-CATGAGGAGCAGAA-TAACAA-GACAATCGAGCAAGAGAAAGCACGGA 556
Query 575 TAT-TAGGGAACTTGGGCT-GGGTTCATTTACAG-TTACATAACTATGGAATTGCAGAGC 631
| | |||||||||| | || ||||||| |||||| || ||||||||||||||||||||||
Sbjct 557 T-TCTAGGGAACTTAG-CTTGGGTTCACTTACAGCTT-CATAACTATGGAATTGCAGAGC 613
Query 632 AGCATTACAGGAGA-GCTTTGGGTTTGGAGCGAGACAAAAACAAACTGTGCAACCTTGCA 690
|| ||||||||| | |||||| |||||| | ||||| ||||| ||||||| ||||||
Sbjct 614 AGTATTACAGGA-ATGCTTTGTCTTTGGAACCTGACAATAACAAGTTGTGCAATCTTGCA 672
Query 691 ATCTGCTTGATGCGTATGGGTCGAATTCC-TGAAGCTAAATCTCTTCTTGATGATGTAAG 749
||||| ||||| ||||||| ||| || ||||||||||||||| ||||| |||||||
Sbjct 673 ATCTGTTTGATACGTATGGAAAGAAC-CCATGAAGCTAAATCTCTGCTTGAGGATGTAAA 731
Query 750 AGATTCTTCTACAGAGAGTGAATGTGGAGA-TGAACCATTCA-CAAAGTCTTATGACCGA 807
| | ||| ||| || | | |||| | ||| |||||| || ||| ||||| ||| ||
Sbjct 732 ACAGTCT-CTAGGGA-A-TCAATG-GAAGAATGAACCGTTTTGCAA-GTCTTTTGAACGG 786
Query 808 GCCGTTGAGATGTTAGCAGACATAGAATCAA 838
|| ||||||||||||||| | |||| |||
Sbjct 787 GCTACTGAGATGTTAGCAGAAAGAGAA-CAA 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63001683975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5