BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329536
Length=726
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20350.2 | Symbols: | oxidoreductases | chr4:10988037-10989... 1125 0.0
> AT4G20350.2 | Symbols: | oxidoreductases | chr4:10988037-10989890
FORWARD LENGTH=1237
Length=1237
Score = 1125 bits (609), Expect = 0.0
Identities = 687/726 (95%), Gaps = 0/726 (0%)
Strand=Plus/Plus
Query 1 ATGGAGTTAGAGAGCTTCAGGGTAGGTTTTACTCCAACAGTATTCTATATTCCCGGTTTC 60
|||||||||||||| |||||||||||| |||||||||| |||||||| ||||||||||||
Sbjct 355 ATGGAGTTAGAGAGATTCAGGGTAGGTCTTACTCCAACTGTATTCTACATTCCCGGTTTC 414
Query 61 ATAACTGAAGAAGAGCAAACTCAGCTACTAAATCATATATATGGAGCATCTGGTTCCAAG 120
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 415 ATAACTGACGAAGAGCAAACTCAGCTCCTAAATCATATATATGGAGCATCTGGTTCCAAG 474
Query 121 TGGAAGACATTAAAGAACAGAAGATTACAGAACTGGGGTGGTATGGTCCATGAAAAGGGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TGGAAGACATTAAAGAACAGAAGATTACAGAACTGGGGTGGTATGGTCCATGAAAAGGGT 534
Query 181 CTTGTTCCACAAGAGTTACCTTCCTGGCTGACAAAGATTACAGCGAAAATTTGTGAAAGC 240
||||||||||||||||| ||| |||||||||||||||| |||||| ||||| |||||||
Sbjct 535 CTTGTTCCACAAGAGTTGCCTCCCTGGCTGACAAAGATAACAGCGGAAATTCATGAAAGC 594
Query 241 TCGGGTCTGTTTCCTTCTGTTATAAATCATGTCCTCATCAATGAATACCATCCTAACCAA 300
||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 595 TCGGGTCTGTTCCCTTCTGCTATAAATCATGTCCTCATCAATGAATACCATCCTGACCAA 654
Query 301 GGGATAATGGCGCACCAAGATGGACCTGCTTATTTTCCTGTTGTAGCTATATTGTCTCTT 360
||||| ||| |||| ||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 655 GGGATTATGCCGCATCAAGATGGACCCGCTTACTTTCCTGTTGTAGCTATCTTGTCTCTT 714
Query 361 GGCTCACCTGTCGTTATGGACTTCAGTCCGCATTTGAGATTAAGATCAGGCGATGGTTAC 420
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 715 GGCTCACCTGTTGTTATGGACTTCACTCCGCATTTGAGATTAAGATCAGGCGATGGTTAC 774
Query 421 ATATCCAAAGACCAAAGTCCCTGTGCAGAGAGTTATGAGCCTGAGAGAGACTCATTCTCT 480
|| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 775 ATTTCCAAAGACCAAAGTCCCTGTGCAGAGAGTTGTGCCCCTGAGAGAGACTCATTCTCT 834
Query 481 GTCTTGATGATGCCTCGAAGCTTACTCATCTTCAAAGATGACGCATATTCAGATTTCCTC 540
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GTCTTGTTGATGCCTCAAAGCTTACTCATCTTCAAAGATGACGCATATTCAGATTTCCTC 894
Query 541 CACGGCATTAGCGATAGTCCAACACAATGCTACAACCAGGTCGTTAATGAAGCTGAAGCT 600
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 895 CACGGCATTAGCGATAGTCCAACACAATGTTACAACCAGGTCGTTAATGAAGCTGAAGCT 954
Query 601 TTGGCTTACTCTAATGAAGAAGATTCAAGAAAAGATGGTGACAGGATTCTTCACAGAGAC 660
|||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 955 TTGGCTTACTCTAACGAAGAAGATTCAAGAAAAGATGGTGACAAGATTTTTCACAGAGAC 1014
Query 661 CAAACTCGAGTCTCACTTACTTGCCGTTTAGTTCCCAAAGTCCATAAGAATCTCTTCAAA 720
||||||||||| ||||||||||||||| ||||||||||||||| ||| |||||||||| |
Sbjct 1015 CAAACTCGAGTTTCACTTACTTGCCGTCTAGTTCCCAAAGTCCGTAAAAATCTCTTCAGA 1074
Query 721 TTTTAG 726
|| |||
Sbjct 1075 TTCTAG 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35214137047
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5