BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329539
Length=834
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20325.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1380 0.0
> AT4G20325.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit
B (InterPro:IPR019024); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink). | chr4:10979741-10982646
FORWARD LENGTH=1238
Length=1238
Score = 1380 bits (747), Expect = 0.0
Identities = 806/835 (97%), Gaps = 2/835 (0%)
Strand=Plus/Plus
Query 1 ATGAGTTCTACTGTTTGGTGGGAAGGAACTGAGAAGACACGAGTTCTCATAGCCCCAGAT 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 185 ATGAGTTCTACTGTTTGGTGGGAAGGAGCTGAGAAGACACGAGTTCTCATAGCCCCAGAT 244
Query 61 TCAGGTTGTGGTGGAAACAAACCTGGAGAACTGTTAACACTCCGCCATCCAAAATCAGAA 120
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 245 TCAGGTTGTGGCGGAAACAAACCCGGAGAACTGTTAACACTCCGCCATCCAAAATCAGAA 304
Query 121 AATGGAACATGCTTCCTTTTTAATAATGAGATGATTCAAGAACTTCAGTGGTTTAAGCAA 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 305 AATGGAACATGCTTCCTTTTTAATAATGAGATGCTTCAAGAACTTCAGTGGTTTAAGCAA 364
Query 181 TCATATGGTTCTTGGTTCTTGGGAGATTACATTTCTGAAGATGGAAGCTTATATATGGCC 240
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 365 TCTTATGGTTCTTGGTTCTTGGGAGATTACATATCTGAAGATGGAAGCTTATATATGGCC 424
Query 241 ACTCCCGTTGATCCTGTTTTCATCTTGTTGCCTATTTTCGACGAAGCAAGAATGAAGAAA 300
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 425 ACTCCAGTTGATCCTGTTTTCATATTGTTGCCTATTTTCGACGAAGCAAGAATGAAGAAA 484
Query 301 GGTGAAGATT-TAGGAAAGTTCAGGCAACTGGATGAGATTTTATTTGTAGAAGGATATCC 359
|||||| ||| | ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 485 GGTGAAAATTCT-GGAAAGTTCAGGCAACTAGATGAGATTTTATTTGTGGAAGGATATCC 543
Query 360 TGGATATCAACATTTGTTGTCACTTGCAGAGAAATGTATGGAAATCGTTTGTCAAACTCA 419
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 544 TGGATATCAACATTTGTTGTCACTTGCAGAGAAGTGTATGGAAATCGTTTGTCAAACTCA 603
Query 420 AGAGGTTGGATCTATGAAGTTCTATCGGCTTGATAACTCGAAAGTCTTAGCTTGGTTAAG 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 AGAGGTTGGATCGATGAAGTTCTATCGGCTTGATAACTCGAAAGTCTTAGCTTGGTTAAG 663
Query 480 TTGTAAGGTATACTGTTTAAAGAAGTCTCTACCGGAATTGGACAAAAACTATGCAGCTCA 539
||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 664 TTGTAAGATCTACTGTTTAAAGAATTCTCTACCGGAATTGGACAAAAACTATGCAGCTCA 723
Query 540 AGATGAGAAACAAACATTGATAGATGCCGTTTCAATTGTGGGAGAGTACCTGAAGACCGA 599
||||||||||||||||||| ||||| |||| |||||||| ||||||||||||||||||||
Sbjct 724 AGATGAGAAACAAACATTGGTAGATTCCGTCTCAATTGTAGGAGAGTACCTGAAGACCGA 783
Query 600 GCCTTGGTTGAAGCTTCTATATGATCATCTTGGACTCAAATTTGTCGACCCGACAATGAA 659
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 784 GCCTTGGTTGAAGCTTCTATATGATCATCTTGGACTCAAATTTGTTGACCCGACGATGAA 843
Query 660 AGAAACCAATATGGAGAATCTTCCAACTGCAAATGAGAATAACATGGCATCCTCAAATTC 719
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 844 AGAAACCAATATGGAGAATCTTCCAACTGCAAATGAGAATAACATGGCATCATCAAATTC 903
Query 720 ATTCCAGGAGAAAGCGAATAAGAAACCAGGAAAACAGACAAAGCAAGCAAAGGTTGAGAC 779
| | |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 904 AATACAGGAGAAAGCGAATAAGAAGCCAGGAAAACAGACAAAGCAAGCAAAGGTAGAGAC 963
Query 780 TGGATCAAAGAACATAAGGGATATGTTTTCAAGGGCTTGTAAGAAAAAATGCTGA 834
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 TGGATCAAAGAACATAAGGGATATGTTTTCAAGGGCTTGTAAGAAAAAATGCTGA 1018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40639424923
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5