BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg329539 Length=834 Score E Sequences producing significant alignments: (Bits) Value AT4G20325.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1380 0.0 > AT4G20325.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit B (InterPro:IPR019024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:10979741-10982646 FORWARD LENGTH=1238 Length=1238 Score = 1380 bits (747), Expect = 0.0 Identities = 806/835 (97%), Gaps = 2/835 (0%) Strand=Plus/Plus Query 1 ATGAGTTCTACTGTTTGGTGGGAAGGAACTGAGAAGACACGAGTTCTCATAGCCCCAGAT 60 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 185 ATGAGTTCTACTGTTTGGTGGGAAGGAGCTGAGAAGACACGAGTTCTCATAGCCCCAGAT 244 Query 61 TCAGGTTGTGGTGGAAACAAACCTGGAGAACTGTTAACACTCCGCCATCCAAAATCAGAA 120 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 245 TCAGGTTGTGGCGGAAACAAACCCGGAGAACTGTTAACACTCCGCCATCCAAAATCAGAA 304 Query 121 AATGGAACATGCTTCCTTTTTAATAATGAGATGATTCAAGAACTTCAGTGGTTTAAGCAA 180 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 305 AATGGAACATGCTTCCTTTTTAATAATGAGATGCTTCAAGAACTTCAGTGGTTTAAGCAA 364 Query 181 TCATATGGTTCTTGGTTCTTGGGAGATTACATTTCTGAAGATGGAAGCTTATATATGGCC 240 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 365 TCTTATGGTTCTTGGTTCTTGGGAGATTACATATCTGAAGATGGAAGCTTATATATGGCC 424 Query 241 ACTCCCGTTGATCCTGTTTTCATCTTGTTGCCTATTTTCGACGAAGCAAGAATGAAGAAA 300 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 425 ACTCCAGTTGATCCTGTTTTCATATTGTTGCCTATTTTCGACGAAGCAAGAATGAAGAAA 484 Query 301 GGTGAAGATT-TAGGAAAGTTCAGGCAACTGGATGAGATTTTATTTGTAGAAGGATATCC 359 |||||| ||| | ||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 485 GGTGAAAATTCT-GGAAAGTTCAGGCAACTAGATGAGATTTTATTTGTGGAAGGATATCC 543 Query 360 TGGATATCAACATTTGTTGTCACTTGCAGAGAAATGTATGGAAATCGTTTGTCAAACTCA 419 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 544 TGGATATCAACATTTGTTGTCACTTGCAGAGAAGTGTATGGAAATCGTTTGTCAAACTCA 603 Query 420 AGAGGTTGGATCTATGAAGTTCTATCGGCTTGATAACTCGAAAGTCTTAGCTTGGTTAAG 479 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 604 AGAGGTTGGATCGATGAAGTTCTATCGGCTTGATAACTCGAAAGTCTTAGCTTGGTTAAG 663 Query 480 TTGTAAGGTATACTGTTTAAAGAAGTCTCTACCGGAATTGGACAAAAACTATGCAGCTCA 539 ||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 664 TTGTAAGATCTACTGTTTAAAGAATTCTCTACCGGAATTGGACAAAAACTATGCAGCTCA 723 Query 540 AGATGAGAAACAAACATTGATAGATGCCGTTTCAATTGTGGGAGAGTACCTGAAGACCGA 599 ||||||||||||||||||| ||||| |||| |||||||| |||||||||||||||||||| Sbjct 724 AGATGAGAAACAAACATTGGTAGATTCCGTCTCAATTGTAGGAGAGTACCTGAAGACCGA 783 Query 600 GCCTTGGTTGAAGCTTCTATATGATCATCTTGGACTCAAATTTGTCGACCCGACAATGAA 659 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 784 GCCTTGGTTGAAGCTTCTATATGATCATCTTGGACTCAAATTTGTTGACCCGACGATGAA 843 Query 660 AGAAACCAATATGGAGAATCTTCCAACTGCAAATGAGAATAACATGGCATCCTCAAATTC 719 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 844 AGAAACCAATATGGAGAATCTTCCAACTGCAAATGAGAATAACATGGCATCATCAAATTC 903 Query 720 ATTCCAGGAGAAAGCGAATAAGAAACCAGGAAAACAGACAAAGCAAGCAAAGGTTGAGAC 779 | | |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 904 AATACAGGAGAAAGCGAATAAGAAGCCAGGAAAACAGACAAAGCAAGCAAAGGTAGAGAC 963 Query 780 TGGATCAAAGAACATAAGGGATATGTTTTCAAGGGCTTGTAAGAAAAAATGCTGA 834 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 964 TGGATCAAAGAACATAAGGGATATGTTTTCAAGGGCTTGTAAGAAAAAATGCTGA 1018 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40639424923 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5