BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329544
Length=675
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20260.4 | Symbols: ATPCAP1, PCAP1 | plasma-membrane associa... 1037 0.0
> AT4G20260.4 | Symbols: ATPCAP1, PCAP1 | plasma-membrane associated
cation-binding protein 1 | chr4:10940746-10943502 FORWARD
LENGTH=1082
Length=1082
Score = 1037 bits (561), Expect = 0.0
Identities = 644/683 (94%), Gaps = 10/683 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTACTGGAATTCGAAGGTTGTTCCAAAGTTCAAGAAGTTATTTGAGAAAAATAGT 60
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 127 ATGGGTTACTGGAATTCCAAGGTTGTTCCAAAATTCAAGAAGTTATTCGAGAAAAATAGT 186
Query 61 GCTAAGAAGGCGGCTGCTGCTGAAGCTACCAAGACCTTTGATGAGTCTAAGGAAACAATC 120
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 187 GCTAAGAAGGCTGCTGCTGCTGAAGCTACCAAGACCTTTGATGAATCTAAGGAAACAATC 246
Query 121 AACAAGGAAATTGAGGAGAAAAAGACAGAACTCCAACCAAAGGTCGTGGAAACCTATGAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 AACAAGGAAATTGAGGAGAAAAAGACAGAACTCCAACCAAAGGTCGTGGAAACCTATGAA 306
Query 181 GCCACGTCTGCCGAAGTCAAG--G-CTTTGGTGAGAGCCCCTAATGAGTCTGGTTTGAAG 237
||||||||||| ||||||||| | |||||||||||| |||||| | | |||||||||||
Sbjct 307 GCCACGTCTGCAGAAGTCAAGCAGGCTTTGGTGAGAGACCCTAAGGTGGCTGGTTTGAAG 366
Query 238 AAAAACTCAGCGGCTGTGCAGAAGTACCTCGAGGAGCTTGTCAAAATTGAATTCCCCGGA 297
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 367 AAAAACTCAGCGGCTGTGCAGAAGTACCTCGAGGAGCTAGTCAAAATTGAATTCCCCGGA 426
Query 298 TCAAAAGCGGTGAGTGAAGCGACGTCTAGCTTCGGAGCTGGCTATGTCGCAGGACCGGTC 357
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 427 TCAAAAGCGGTGAGTGAGGCTTCGTCTAGCTTCGGAGCTGGCTATGTCGCAGGACCGGTC 486
Query 358 ACATTCATATTCGAGAAGGTATGTGTTTTCCTCCCTGAGGAGGTGAAGACAAAAGAAATA 417
|| ||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||
Sbjct 487 ACGTTCATATTCGAGAAGGTATCTGTTTTCCTCCCGGAGGAGGTGAAGACTAAAGAAATA 546
Query 418 CCGGTGGAGGAAGTGAAAACGGAAGAACCTGCCAAAACTGAAGAACCAGCCAAAACGGAA 477
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct 547 CCGGTGGAGGAAGTGAAAGCTGAAGAACCTGCCAAAACTGAAGAACCAGCCAAAACCGAA 606
Query 478 G-AACCAAGTGGTGAGAAAGAGGAGATTGTTGAAGAGGTCAA-GAAAGACGAGACCCCTG 535
| ||| ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||
Sbjct 607 GGAAC-AAGTGGTGAGAAAGAGGAGATTGTTGAAGAGA-CAAAGAAAGGCGAGACCCCTG 664
Query 536 CTACCGCAGTCGTGGAGGAGAAGAAACCAGAGGTAGAGGAGAAGAAGGAAGAAGCTACTC 595
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 665 AAACCGCGGTCGTGGAGGAGAAGAAACCAGAGGTAGAGGAGAAGAAGGAAGAGGCTACTC 724
Query 596 CGGCTCCGGCGGTGGTTGAAACTCCAGTTAAGGAACCGGA-A-A-CGACGACAGCGCCTG 652
|||||||||| ||||||||||||||||||||||||||||| | | ||||||||||||| |
Sbjct 725 CGGCTCCGGCAGTGGTTGAAACTCCAGTTAAGGAACCGGAGACAACGACGACAGCGCCAG 784
Query 653 TGGCTGAACCACCAAAGCCTTGA 675
|||||||||||||||||||||||
Sbjct 785 TGGCTGAACCACCAAAGCCTTGA 807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32652195550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5