BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329563
Length=630
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20000.1 | Symbols: | VQ motif-containing protein | chr4:10... 809 0.0
> AT4G20000.1 | Symbols: | VQ motif-containing protein | chr4:10838310-10839142
FORWARD LENGTH=833
Length=833
Score = 809 bits (438), Expect = 0.0
Identities = 565/627 (90%), Gaps = 6/627 (1%)
Strand=Plus/Plus
Query 7 AACAACTCTAGAGAAGACCAGTGGTTGCGACACTATGAACAACACCAA-ATTCAAGAGAT 65
|||||||||||||||||||||||||| | ||||||||| ||||| || |||||||||||
Sbjct 61 AACAACTCTAGAGAAGACCAGTGGTTACAACACTATGAGCAACA-AAATATTCAAGAGAT 119
Query 66 TAATCCGTGCTTCAACGCCATTAACATGGGC-TCATCATCGGGATCTTCCCTTCGAGATG 124
|| |||||||||||||||||||||||| || ||||| ||||||||||||||| |||| |
Sbjct 120 TACTCCGTGCTTCAACGCCATTAACAT-CGCGTCATCGTCGGGATCTTCCCTTGGAGACG 178
Query 125 GTGGTGCGGTGGAACATGAAGCTGCCGGAAGGAGATCTAGGGCTTCGAGGAGAGCCATAC 184
||||||| | || |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 179 GTGGTGCCGCGGCACATGAAGCTGCTGGAAGGAGATCTAGGGCTTCGAGGAGAGCCATAC 238
Query 185 CAACGACCCTCCTAAACGCAAACCCTAGCAATTTCCGAGCCCTTGTTCAGAAATTTACGG 244
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 239 CAACAACCCTCCTAAACGCAAACCCTAGCAATTTCCGAGCCCTAGTTCAGAAATTTACCG 298
Query 245 GACGTTCTGCGGGAGGTGGATCCAACCGCAGAAAAGGTCCGGTTACTCTAGATTTTGGGT 304
|||||||||| ||||||| |||||||||||||||||||||||| ||| | ||||| ||||
Sbjct 299 GACGTTCTGCCGGAGGTGAATCCAACCGCAGAAAAGGTCCGGTGACTTTGGATTTCGGGT 358
Query 305 CTCCGACAACAATCTCTAAAGAAGCTATATTTCCTGTCTCC-GCCGATCGGAGTAATCAC 363
|||| || |||||||| ||||||||||| ||||| ||||| || ||||| |||||| ||
Sbjct 359 CTCCCACTACAATCTCCAAAGAAGCTATCTTTCCAGTCTCAAGC-GATCGAAGTAATAAC 417
Query 364 GATGATCATCATGTGCTTAACCAACACGTGAGTAACGAGCAGCCTCACGTGACTTGGTCA 423
|| | |||||||| | ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 418 AATCTTGATCATGTGGTCAACCAACACGTGAGTAACGAGCAGCGTCACGTGACTTGGTCA 477
Query 424 GGTACAGAATCAACGATGTCGTACCAGCTAGGAGAGGAAACTAACTCGGCGGTTTACGGC 483
||||||||||||| ||||||||| ||| |||| |||||||||||||||||||||||| ||
Sbjct 478 GGTACAGAATCAATGATGTCGTATCAGTTAGGCGAGGAAACTAACTCGGCGGTTTACAGC 537
Query 484 AGCAGGTACGATGACCAAGATCTTCTGAAGGAATATTCCGGGAATAGTAGTTATGATGAT 543
||| |||||||||| |||||||||| || |||||| |||||||||||||| ||||||||
Sbjct 538 AGCGGGTACGATGATCAAGATCTTCCGAGGGAATACTCCGGGAATAGTAGCTATGATGAA 597
Query 544 AGTTCGGGTCACATGGATTATTATCATGATTTCCACCATGAGACGGCAACATTGGAGGAA 603
|||| || |||||||||||||||||| |||||||||| |||||||||||||||||| ||
Sbjct 598 AGTTTGGATCACATGGATTATTATCAAGATTTCCACCGTGAGACGGCAACATTGGAAGAG 657
Query 604 TTTATGATGAGAGATCTTGATTTATAA 630
||||||||||||||||| |||||||||
Sbjct 658 TTTATGATGAGAGATCTCGATTTATAA 684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30391658935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5