BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329571
Length=675
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19950.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 697 0.0
AT5G44860.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 405 3e-112
AT1G31130.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 259 2e-68
> AT4G19950.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G44860.1);
Has 338 Blast hits to 330 proteins in 72 species: Archae -
2; Bacteria - 94; Metazoa - 7; Fungi - 0; Plants - 232; Viruses
- 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr4:10809877-10811084
FORWARD LENGTH=1208
Length=1208
Score = 697 bits (377), Expect = 0.0
Identities = 430/456 (94%), Gaps = 2/456 (0%)
Strand=Plus/Plus
Query 1 ATGGATCTTGCCCCAGAGGAGCTTCAATTTCTCAACAAAAGAGGAATTCTACGTGAATCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 ATGGATCTTGCCCCAGAGGAGCTTCAATTTCTCAACAAAAGAGGAATTCTACGTGAATCA 160
Query 61 ACATCAATCCCACAATATTCTCCCAAAACCTTTTACCTCATAACCCTAACCCTAATTTTC 120
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 161 ACATCAATCCCACAATATTCTCTAAAAACCTTTTACCTCATAACCCTAACCCTAATTTTC 220
Query 121 CCTCTCTCCTTCGCAATCCTAGCACATTCTCTCTTCACACAACCAATCTTAGCTCAGATC 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 221 CCTCTCTCCTTCGCAATCCTAGCCCATTCTCTCTTCACACAACCAATCTTAGCTCAGATC 280
Query 181 GATACTTACCCACAAACCGATCAAGCTCAAA-CCAAACATGAATGGACCATCCTCCTCCT 239
||||| ||||||||| |||||||| ||||| |||| |||||||||||| |||||||| |
Sbjct 281 GATACATACCCACAAGCCGATCAATCTCAACTCCAA-CATGAATGGACCGTCCTCCTCGT 339
Query 240 TTTCCAATTCAGCTACTTGATCTTCCTTTTTGCCTTCTCTCTTCTCTCAACCGCCGCTGT 299
|||||||||| ||||| | |||||||| || ||||||||||||||||| || ||||| ||
Sbjct 340 TTTCCAATTCTGCTACATCATCTTCCTCTTCGCCTTCTCTCTTCTCTCCACAGCCGCCGT 399
Query 300 TGTCTTCACCGTCGCTTCTCTTTACACCGGAAAGCCAGTTTCTTTCTCATCAACAATGTC 359
|||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 400 TGTCTTCACCGTCGCTTCTCTTTACACCGGAAAGCCTGTTTCTTTCTCCTCCACAATGTC 459
Query 360 AGCGATACCTCTCGTCCTCAAAAGATTGTTCATCACTTTCCTCTGGGTCTCTCTCTTGAT 419
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 460 AGCGATACCTCTCGTCCTCAAAAGATTGTTCATAACATTCCTCTGGGTCTCTCTTTTGAT 519
Query 420 GCTTGCGTACAACACCGTGTTCTTGATATTCTTGGT 455
||||||||||||||||||||||||||| ||||||||
Sbjct 520 GCTTGCGTACAACACCGTGTTCTTGATCTTCTTGGT 555
Score = 344 bits (186), Expect = 6e-94
Identities = 201/208 (97%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 469 AGAATAGTCGCTGGTGGATTCTTGGTTGGTGTTCTTGTGATAGTGAATCTAATTGGATTG 528
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 860 AGAATCGTCGCTGGTGGATTCTTGGTTGGTGTTCTTGTGATAGTGAATCTAATTGGACTG 919
Query 529 CTTGTGCAGAGTGTGTTTTACTATGTTTGCAAGAGTTTTCATCATCAGGACATTGATAAA 588
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 920 CTTGTGCAGAGTGTGTTTTACTATGTTTGCAAGAGTTTTCATCATCAGGAGATTGATAAA 979
Query 589 TCCGCTTTGCACGATCATCTCGGTGGGTATCTTGGTGAATACGTGCCTCTTAAGAGCAAC 648
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 980 TCCGCTTTGCACGATCATCTCGGTGGGTATCTCGGTGAATATGTGCCTCTTAAGAGCAAC 1039
Query 649 ATTCAAATGGAGAACTTTGA-GATTTGA 675
|||||||||||||||||||| | |||||
Sbjct 1040 ATTCAAATGGAGAACTTTGAAG-TTTGA 1066
> AT5G44860.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G19950.1);
Has 233 Blast hits to 227 proteins in 25 species: Archae -
0; Bacteria - 13; Metazoa - 1; Fungi - 0; Plants - 216; Viruses
- 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr5:18110458-18111812
REVERSE LENGTH=1355
Length=1355
Score = 405 bits (219), Expect = 3e-112
Identities = 375/450 (83%), Gaps = 12/450 (3%)
Strand=Plus/Plus
Query 1 ATGGATCTTGCCCCAGAGGAGCTTCAATTTCTCAACA-AAAGAGGAAT-TCTACGTGAAT 58
|||||||| || |||| ||||||||||||||||||| | ||| || | |||||||||
Sbjct 160 ATGGATCTCGCTGCAGAAGAGCTTCAATTTCTCAACATTCA-AGGCATAT-TACGTGAAT 217
Query 59 CAACATCAAT-CCCACAATATTCTCCC-AAAACCTTTTACCTCATAACCCTAACCCTAAT 116
| ||| |||| |||| ||| ||| ||| |||||||| |||||||||||||||||||||||
Sbjct 218 CCACAACAATCCCCA-AATTTTC-CCCAAAAACCTTCTACCTCATAACCCTAACCCTAAT 275
Query 117 TTTCCCTCTCTCCTTCGCAATCCTAGCACATTCTCTCTTCACACAACCAATCTTAGCTCA 176
|||||||||||||||||||||||| || ||||| ||||| || |||||||||||||||||
Sbjct 276 TTTCCCTCTCTCCTTCGCAATCCTCGCTCATTCCCTCTTTACCCAACCAATCTTAGCTCA 335
Query 177 GATCGATACTTAC-CCACAAACCGATCAAGCTCAAACCAAACATGAATGGACCATCCTCC 235
| | ||| | || || | | |||||| || ||||||| || ||||||||| | || |
Sbjct 336 GCTAGATGCA-ACTCCTCCTTCAGATCAATCTAAAACCAATCACGAATGGACCCTTCTTC 394
Query 236 TCCTTT-TCCAATTCAGCTACTTGATCTTCCTTTTTGCCTTCTCTCTTCTCTCAACCGCC 294
|| ||| || |||||| |||| | |||||||| || |||||||||||||||||||| |||
Sbjct 395 TCATTTATC-AATTCATCTACGTCATCTTCCTCTTCGCCTTCTCTCTTCTCTCAACAGCC 453
Query 295 GCTGTTGTCTTCACCGTCGCTTCTCTTTACACCGGAAAGCCAGTTTCTTTCTCATCAACA 354
|| || ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 454 GCCGTCGTCTTCACCGTCGCTTCGCTTTACACGGGAAAGCCAGTTTCTTTCTCTTCAACA 513
Query 355 ATGTCAGCGATACCTCTCGTCCTCAAAAGATTGTTCATCACTTTCCTCTGGGTCTCTCTC 414
||||||||||| ||||| || | || | |||||||| || ||||| ||||| ||| |
Sbjct 514 ATGTCAGCGATTCCTCTGGTTTTGAAGCGTTTGTTCATTACCTTCCTTTGGGTTTCTTTA 573
Query 415 TTGATGCTTGCGTACAACACCGTGTTCTTG 444
||||||||| ||||||| | || ||||||
Sbjct 574 ATGATGCTTGTGTACAACTCTGTCTTCTTG 603
Score = 220 bits (119), Expect = 1e-56
Identities = 172/197 (87%), Gaps = 6/197 (3%)
Strand=Plus/Plus
Query 480 TGGTGGATTCTTGGTTGGTG-TTCTTGTGATAGTGAATCTAATTGGATTGCTTGTGCAGA 538
|||||| ||||||||||| | |||| ||||| ||||||||| |||| ||||||||||||
Sbjct 930 TGGTGGTTTCTTGGTTGG-GATTCTAGTGATTGTGAATCTAGTTGGGCTGCTTGTGCAGA 988
Query 539 GTGTGTTTTACTATGTTTGCAAGAGTTTTCATCATCAGGAC-ATTGATAAATCCGCTTTG 597
||||||||||||||||||| |||||||||||||||||| | ||||||||||| || |||
Sbjct 989 GTGTGTTTTACTATGTTTGTAAGAGTTTTCATCATCAGC-CGATTGATAAATCTGCGTTG 1047
Query 598 CACGATCATCTCGGTGGGTATCTTGGTGAATACGTGCCTCTTAA-GAGCAACATTCAAAT 656
||||||||||| ||||| ||||||||||| || ||||| |||| ||||| ||||| ||
Sbjct 1048 CACGATCATCTTGGTGGATATCTTGGTGACTATGTGCCG-TTAAAGAGCAGTATTCAGAT 1106
Query 657 GGAGAACTTTGAGATTT 673
|||||||||||| ||||
Sbjct 1107 GGAGAACTTTGATATTT 1123
> AT1G31130.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19950.1);
Has 246 Blast hits to 244 proteins in 29 species:
Archae - 2; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants
- 222; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
| chr1:11114701-11116195 REVERSE LENGTH=1495
Length=1495
Score = 259 bits (140), Expect = 2e-68
Identities = 300/375 (80%), Gaps = 20/375 (5%)
Strand=Plus/Plus
Query 79 TCTCCCAA-AACCTTTTACCTCATAACCCTAACCCTAATTTTCCCTCTCTCCTTCGCAAT 137
||| |||| |||||| |||||||||||||| || | || ||||||||||||||||| ||
Sbjct 346 TCT-CCAAGAACCTTCTACCTCATAACCCTCTCCTTCATCTTCCCTCTCTCCTTCGCTAT 404
Query 138 CCTAGCACATTCTCTCTTCACACAACCAATCTTAGCTCAGA-TCG--ATA-CTTACCCA- 192
||| || || || |||||||| |||||||||||||| || | ||| | | | |||||
Sbjct 405 CCTCGCTCACTCACTCTTCACTCAACCAATCTTAGC-CAAACTCGACAAATCCGACCCAC 463
Query 193 CAAAC-C-GATCAAGCTCAAACCAAACATGAATGGACCATCCTCCTCCTTTTCCAATTCA 250
||||| | |||| | || | | ||||| ||||| | || || | ||||| ||||
Sbjct 464 CAAACTCAGATC--GTTC--A-C-GTCATGATTGGACTGTTCTTCTAATCTTCCAGTTCA 517
Query 251 GCTACTTGATCTTCCTTTTTGCCTTCTCTCTTCTCTCAACCGCCGCTGTTGTCTTCACCG 310
| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 518 GTTACTTGATCTTCCTCTTTGCCTTCTCTCTTCTCTCAACCGCTGCTGTTGTCTTCACCG 577
Query 311 TCGCTTCTCTTTACACCGGAAAGCCAGTTTCTTTCTCATCAACAATGTCAGCGATACCTC 370
||||||||||||||||||||||||| ||||||||||| ||||| | || ||||| || |
Sbjct 578 TCGCTTCTCTTTACACCGGAAAGCCTGTTTCTTTCTCGTCAACTCTCTCTGCGATTCC-C 636
Query 371 TC-GTCCTCAAAAGATTGTTCATCACTTTCCTCTGGGTCT-CTCTCTTGATGCTTGCGTA 428
||| | ||| || | || || |||||||| ||||| | |||| |||||| |||| ||
Sbjct 637 AAAGTCTTTAAACGACTCTTTATAACTTTCCTTTGGGT-TGCTCTGTTGATGTTTGCTTA 695
Query 429 CAACACCGTGTTCTT 443
||| | || |||||
Sbjct 696 TAACGCAGTCTTCTT 710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32652195550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5