BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329573
Length=228
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19905.1 | Symbols: LCR38 | low-molecular-weight cysteine-ri... 313 5e-85
> AT4G19905.1 | Symbols: LCR38 | low-molecular-weight cysteine-rich
38 | chr4:10794165-10794758 REVERSE LENGTH=231
Length=231
Score = 313 bits (169), Expect = 5e-85
Identities = 212/232 (91%), Gaps = 5/232 (2%)
Strand=Plus/Plus
Query 1 ATGGCAAAACTACTTTGTTCGTATCTATTCATCTGCATGTTTGTTCTCTCAGGCTTTTTG 60
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAAAACTACTGTGTTCTTATCTGTTCATCTGCATGTTTGTTCTCTCAGGCTTTTTG 60
Query 61 GCCTCTTCAAGTGCAAAGAAGTTAAAAACATGTACCTCGGTCATAAAACTTGGCCACCCA 120
| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTATTTTCAAGTGCAAAGCAGTTAAAAACATGTACCTCGGTCATAAAACTTGGCCACCCA 120
Query 121 TGCGATGTTGAATCATGCATAAATGAGTGTTTTCGAGTTTACAATACTGGATTTGCAACT 180
|| ||| ||||||||||| |||| ||||||||||||||||||||||| ||||||||||||
Sbjct 121 TGTGATATTGAATCATGCCTAAACGAGTGTTTTCGAGTTTACAATACCGGATTTGCAACT 180
Query 181 TGTCGTGGAGACAAAGTA---A-AAGTTTGCACTTGTGAGTACAATTGCTAA 228
||||| |||||||| ||| | || |||| |||||||||||||||||||||
Sbjct 181 TGTCGCGGAGACAA-GTACTCACAACTTTGTACTTGTGAGTACAATTGCTAA 231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10254620796
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5