BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329582
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19810.1 | Symbols: | Glycosyl hydrolase family protein wit... 1762 0.0
AT4G19820.1 | Symbols: | Glycosyl hydrolase family protein wit... 819 0.0
AT4G19720.1 | Symbols: | Glycosyl hydrolase family protein wit... 239 5e-62
> AT4G19810.1 | Symbols: | Glycosyl hydrolase family protein with
chitinase insertion domain | chr4:10763934-10765753 REVERSE
LENGTH=1357
Length=1357
Score = 1762 bits (954), Expect = 0.0
Identities = 1082/1144 (95%), Gaps = 8/1144 (1%)
Strand=Plus/Plus
Query 1 ATGTCTACAACAAAACTCATCTCGCTCATTGTCTCCATAACATTCTTCCTCTCTCTCCCA 60
|||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||| |
Sbjct 1 ATGTCTTCAACAAAACTCATATCGCTCATTGTCTCCATAACATTCTTCCTCACTCTCCAA 60
Query 61 TCCTCCTAT-GCACAAACCGTCGTAAAAGCATCGTATTGGTTCCCTGCGAGTGAATTTCC 119
| || | || |||||||| ||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 61 TGCT-CAATGGCACAAACTGTCGTAAAAGCTTCGTACTGGTTCCCGGCGAGTGAATTTCC 119
Query 120 GGTTACCGACATTGACTCATCTCTCTTCACTCATCTCTTTTGCGCTTTCGCTGATCTCAA 179
||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 120 GGTTACCGACATTGACTCATCTCTCTTCACTCACCTTTTTTGTGCTTTCGCTGATCTCAA 179
Query 180 CTCTCAAACCAATCAAGTCACTGTCGCCTCCGCGAACCAACCTAAATTCTCAACCTTTAC 239
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 180 CTCTCAAACCAATCAAGTCACTGTCTCCTCCGCAAACCAACCTAAATTCTCAACCTTTAC 239
Query 240 ACAAACTGTCCAACGCAGAAACCCTTCTGTTAAAACCCTTTTGTCTATCGGCGGTGGAAT 299
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 240 ACAAACTGTCCAACGCAGAAACCCTTCTGTTAAAACCCTCTTGTCCATCGGCGGTGGAAT 299
Query 300 CGCGGATAAAACCGCGTATGCTTCTATGGCAAGCAACCCCACTTCTCGAAAATCGTTCAT 359
|| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 300 AGCAGATAAAACCGCGTATGCTTCTATGGCAAGTAACCCCACTTCTCGAAAATCATTCAT 359
Query 360 TGATTCTTCGATAAGACTCGCTAGATCATATGGATTCCACGGTCTTGATCTAGACTGGGA 419
|||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 TGATTCTTCGATAAGAGTGGCTAGATCCTATGGATTCCACGGTCTTGATCTAGACTGGGA 419
Query 420 GTATCCGAGCAGCGCGACGGAGATGACCAACTTCGGGACACTACTTCGAGAATGGCGATC 479
|||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 420 GTATCCGAGCAGTGCGACGGAGATGACCAACTTCGGAACGCTACTTCGAGAATGGCGATC 479
Query 480 AGCTGTTGTAGCCGAAGCTAGTAGCAGCGGTAAACCGCGTTTGCTTTTGGCAGCTGCGGT 539
||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 AGCGGTTGTAGCAGAAGCTAGTAGCAGCGGTAAACCGCGTTTGCTTTTGGCGGCTGCGGT 539
Query 540 TTTCTACTCCAACAATTACTATTCGGTACTGTACCCGG-TTCAATCCGTTGCTAGCAGCC 598
|||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 540 TTTCTACTCCAACAATTACTATTCGGTACTGTACCCGGTTTC-AGCCGTTGCTAGCAGCT 598
Query 599 TGGATTGGGTTAATCTTATGGCTTATGATTTTTACGGACCGGGTTGGTCCAGAGTGACCG 658
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 599 TGGATTGGGTTAATCTTATGGCCTATGATTTTTACGGACCGGGTTGGTCCAGAGTGACCG 658
Query 659 GTCCACCAGCCGCTCTGTTTGATCCTTCAAACGCAGGTCCAAGCGGAGACGCGGGAGCAA 718
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 659 GTCCACCAGCCGCTCTGTTTGATCCTTCAAACGCAGGTCCAAGCGGAGACGCTGGAACAA 718
Query 719 GGTCATGGATTCAAGCTGGACTTCCGGCGAAGAAAGCAGTCTTGGGATTTCCATACTACG 778
|||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 719 GGTCATGGATTCAAGCTGGACTCCCAGCGAAGAAAGCTGTCTTGGGATTTCCATACTACG 778
Query 779 GCTACGCGTGGCGTCTCACAAACGCTAACAGTCACAGCTACTACGCGCCTACCACAGGAG 838
| ||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 779 GGTACGCGTGGCGTCTCACAAACGCCAACAGTCATAGCTACTACGCGCCTACCACTGGAG 838
Query 839 CTGCGATATCACCGGATGGTTCGATAGGTTACGGTCAGATAAGGAAGTTTATAGTAGATA 898
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CGGCGATATCACCAGATGGTTCGATAGGTTACGGTCAGATAAGGAAGTTTATAGTAGATA 898
Query 899 ACGGAGCAACAACGGTTTATAACTCGACGGTGGTCGGAGATTATTGTTACGCCGGCAC-A 957
||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| |
Sbjct 899 ACGGAGCAACAACGGTTTATAACTCCACAGTGGTCGGAGATTATTGTTATGCCGGCACGA 958
Query 958 ACTTGGATTGGTTATGACGATAATCAGAGTATTGTGACGAAAGTTAGATACGCTAAGCAG 1017
| |||||||||||| || |||||||||||||||||||||||||||||||| || ||||||
Sbjct 959 A-TTGGATTGGTTACGATGATAATCAGAGTATTGTGACGAAAGTTAGATATGCCAAGCAG 1017
Query 1018 AGAGGTCTT-CTCGGTTACTTCTCGTGGCATGTTGGTGCTGACGATAATTCTGGTTTATC 1076
|||||| || || |||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1018 AGAGGT-TTGCTTGGTTACTTCTCGTGGCATGTCGGTGCTGACGATAATTCTGGTCTATC 1076
Query 1077 TCGTGCAGCTTCACAGGCATGGGATGCTACGACGGCAACCACCAGAACTATACAGAAGGT 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TCGTGCAGCTTCACAGGCATGGGATGCTACGACGGCAACCACCAGAACTATACAGAAGGT 1136
Query 1137 TTAA 1140
||||
Sbjct 1137 TTAA 1140
> AT4G19820.1 | Symbols: | Glycosyl hydrolase family protein with
chitinase insertion domain | chr4:10767436-10768614 REVERSE
LENGTH=1101
Length=1101
Score = 819 bits (443), Expect = 0.0
Identities = 877/1082 (81%), Gaps = 48/1082 (4%)
Strand=Plus/Plus
Query 34 TCCATAACATTCTTC--CTCTCT-CTCC--C-ATCCTCCTATGCACAAACCGTCGTAAAA 87
||||| || |||||| ||||| |||| | || ||||| || ||||| ||||| |||
Sbjct 22 TCCATCACTTTCTTCTTATCTCTCCTCCTACGATTCTCCTCCGCCCAAACAGTCGTGAAA 81
Query 88 GCAT-CGTATTGGTTCCCTGCGAGTGAATTTCCGGTT-ACCGACATTGACTCATCTCTCT 145
|| | | || ||||| | | |||||||| ||| ||| || | ||||||||||||||||
Sbjct 82 GC-TACCTACTGGTTTGCGGAGAGTGAATCTCC-GTTGGCCCAAATTGACTCATCTCTCT 139
Query 146 TCACTCATCTCTTTTGCGCTTTCGCTGATCTCAACTCTCAAACCAATCAAGTCACTGTCG 205
||||||| || |||||||||||||| ||| ||||| ||| |||| ||||||||| ||||
Sbjct 140 TCACTCACCTTTTTTGCGCTTTCGCCGATATCAACACTCTAACCTATCAAGTCATTGTCT 199
Query 206 CCTCCGCG-AACCAACCTAAATTCTCAACCTTTACACAAACTGTCCAACGCAGAAACCCT 264
||||| | ||| |||| ||||||||||| ||||||||||| |||| ||| |||||||||
Sbjct 200 CCTCC-AGAAACAAACCCAAATTCTCAACATTTACACAAACCGTCCGACGGAGAAACCCT 258
Query 265 TCTGTTAAAACCCTTTTGTCTATCGGCGGTGGA-ATCGCGGATAAAACCGCGTATGCTTC 323
| || |||||||||||||||||||||||| || || | |||| ||||| ||| ||
Sbjct 259 ACCGTGAAAACCCTTTTGTCTATCGGCGGT-GATTTCACATATAATTTCGCGTTTGCGTC 317
Query 324 TATGGCAAGCAACCCCACTTCTCGAAAATC-GTTCATTGA-TTCTTCGA-TAAGACTCGC 380
||||||||| |||||||| ||| ||||| | ||||||| | |||||| | |||| |||||
Sbjct 318 TATGGCAAGTAACCCCACCTCTAGAAAA-CTGTTCATT-AGTTCTTCTATTAAG-CTCGC 374
Query 381 TAGATCATATGGATTCCACGGTCTTGATCTAGACTGGGAGTATCCGAGCAGCGCGACGGA 440
|||||| | |||||||||||||| |||||| | ||| |||||||||||| |||||||
Sbjct 375 TAGATCGTGCGGATTCCACGGTCTCGATCTAAATTGGAAGTATCCGAGCATTACGACGGA 434
Query 441 GAT-GACCAACTTCGGGACA-CTACTTCGAGAATGGCGATCAGCTGTTGTAGCCGAAGCT 498
||| || ||| ||||||| | ||||||||||||||||||| || |||| ||| || |||
Sbjct 435 GATGGA-CAATTTCGGGA-AGCTACTTCGAGAATGGCGATTGGCGGTTGAAGCAGAGGCT 492
Query 499 AGTAGCAGCGGTAAACCGCGTTTGCTTTTGGCAGCTGCGGTTTTCTACTCCAACAATTAC 558
|| ||||||||||||||||||||||||||| | |||||||| ||||||||| ||| |||
Sbjct 493 AGAAGCAGCGGTAAACCGCGTTTGCTTTTGACGGCTGCGGTATTCTACTCCTACAGTTAT 552
Query 559 TATTCGGTAC-TGTACCCGGTTCAAT-CCGTTG-CTAGCAGCCTGGATTGGGTTAATCTT 615
|||||||| | | |||| ||| ||| |||||| | | ||| | |||||||||||||||
Sbjct 553 TATTCGGT-CTTACACCCAGTT-AATGCCGTTGCCGA-TAGCTTAGATTGGGTTAATCTT 609
Query 616 ATGGCTTATGATTTTTACGGACCGGGTTGGTCCAGAGTGAC-CGGTCCACCAGC-CGCTC 673
| || || |||||||| | | |||||| ||| ||||| || | | ||||||| | |||
Sbjct 610 GTTGCCTACGATTTTTATGAATCGGGTTCGTCTAGAGTAACTTGCT-CACCAGCTC-CTC 667
Query 674 TGTTTGATCCT-TCAAACGCAGGTCCAAGCGGAGACGCGGGAGCAAG-GTCATGGATTCA 731
| | |||||| | || | ||||||||||||| ||||| |||| || | | |||| |||
Sbjct 668 TCTACGATCCTAT-AACCACAGGTCCAAGCGGCGACGCCGGAGTGAGAG-CGTGGACTCA 725
Query 732 AGCTGGACTTCCGGCGAAGAAAGCAGTCTTGGGATTTCCAT-ACTACGGCTACGCGTGGC 790
||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||
Sbjct 726 AGCTGGACTTCCGGCGAAGAAAGCAGTCTTGGGATTTCCATTA-TACGGCTACGCATGGT 784
Query 791 GTCTCACAAACGCTAACAGTCACAGCTACTACGCGCCTACCA-CAGGAGCTGCGATATCA 849
|||||||| |||| || | ||| | |||||||||| || || | ||| | |||||||||
Sbjct 785 GTCTCACAGACGCCAAGAATCATAACTACTACGCGAATAGCAGC-GGACCGGCGATATCA 843
Query 850 CCGGATGGTTCGATAGGTTACGGTCAGATAAGGAAGTTT-ATAGTAGATAACGGAGCAAC 908
|| || ||||| || || |||| ||||||||| ||| || ||||| |||||| ||||||
Sbjct 844 CCAGACGGTTCTATCGGATACGATCAGATAAG-AAGGTTCATAGTGGATAACAAAGCAAC 902
Query 909 AACGGTTTATAACTCGACGGTGGT-CGGAGATTATTGTTACGCCG-GCACAACTTGGATT 966
| ||||||||| |||| |||| | || |||| ||||| ||| | | | ||||||||
Sbjct 903 GATGGTTTATAATTCGAATTTGGTTCAGA-ATTACTGTTATGCCAAGAAGA-CTTGGATT 960
Query 967 GGTTATGACGATAATCAGAGTATTGTGACGAAAGTTAGATACGCTAAGCAGAGAGGTCTT 1026
||||| || |||||||| |||||||| | |||||| | |||||||||||| ||||||||
Sbjct 961 GGTTACGATGATAATCAAAGTATTGTTATGAAAGTGAAATACGCTAAGCAAAGAGGTCTA 1020
Query 1027 CTCGGTTACTTCTCGTGGCATGTTGGTGCTGACGATAATTCTGGTTTATCTCGTGCAGCT 1086
|| ||||| ||||||||||| |||| ||||||||||||||| || |||||||||||| |
Sbjct 1021 CTTGGTTATTTCTCGTGGCACATTGGAGCTGACGATAATTCTCGTCTATCTCGTGCAGGT 1080
Query 1087 TC 1088
||
Sbjct 1081 TC 1082
> AT4G19720.1 | Symbols: | Glycosyl hydrolase family protein with
chitinase insertion domain | chr4:10730363-10731750 REVERSE
LENGTH=1147
Length=1147
Score = 239 bits (129), Expect = 5e-62
Identities = 721/993 (73%), Gaps = 95/993 (10%)
Strand=Plus/Plus
Query 136 TCATCTCTCTTCACTCATCTCTTT-TGCG-CTTTCGCTGATCTCAACTCTCAAACCAATC 193
||| |||||||||||||||| ||| |||| |||| || || || || |||| ||||| |
Sbjct 158 TCAACTCTCTTCACTCATCT-TTTCTGCGCCTTT-GCCGACCTTGACCCTCAGACCAA-C 214
Query 194 A-AGTCACTGTCGCCTCCGCGAACCAACCTA-AATTCT-CAACCTTTACAC-AAACT-GT 248
| ||| |||| || ||| || || | | |||||| ||| | || ||| ||| | ||
Sbjct 215 AGCGTCGTTGTCTCCGGCGCTCACGAA-CAAGAATTCTCCAA-C-TT-CACTAAAATCGT 270
Query 249 CCAACGCAG--AAACCCTTC-TGTTAAAACCCTTTTGTCTATCGGCGGTGGAATCGCGGA 305
||| | || |||||| || || ||||||| ||||| |||||||| ||| ||| ||
Sbjct 271 -CAA-GAAGAAAAACCC-TCACGTGCAAACCCTCTTGTCCATCGGCGGAAGAAACGCAGA 327
Query 306 TAAAACCGCGTATGCTTCTATGGCAAGCAACCCCACTTCTCGAAAATCGTTCA-TTGATT 364
|||| |||||| ||| ||||||||||| |||||||||||||| ||||| |||| ||| |
Sbjct 328 TAAATCCGCGTTTGCGTCTATGGCAAGTAACCCCACTTCTCGTAAATCCTTCATTTG-GT 386
Query 365 CTTCGATAAGAC-TCGCTAGATCA-TATGGATTCCACGGTCTTGATCTAGACTGGGAGTA 422
|| |||| | |||||||| | ||| |||| |||| |||||||| | ||| ||||
Sbjct 387 CTGCGAT-CTCCAGCGCTAGAT-ACTATCGATTTGACGGACTTGATCTGGTTTGGAAGTA 444
Query 423 TCCGAGCAGCGCGA--CGGAGATGACCAACTTCGGGAC-ACTACTTCG-AGAATGGCGAT 478
|| | || || |||||||| ||||| || | ||||||| | | ||||||||
Sbjct 445 -CCCAAAAG-ATGATGTGGAGATGAGAAACTT-TGGTCAACTACTT-GAACAATGGCGAG 500
Query 479 CAGCTG-TTGTA-GCCGAAGCTAGTA-GCAGCGGTAA-ACCGCGTTTGCTTTTGGCAGCT 534
||| | ||| | | ||| ||| | | ||| | | || | || |||||| ||| | |||
Sbjct 501 AAGC-GATTG-AGGACGATGCT-GAACGCA-CCGAAAGAATGCCTTTGCTATTGACGGCT 556
Query 535 GCGGTTTTCTACTCCAAC-AATTACTATTC-GGTACTGTACCCGGTTCAATCCG-TTGCT 591
||||||| ||||| | | |||| |||| | | | ||||| ||| | ||
Sbjct 557 GCGGTTTACTACT-CTCCGGTTTACGATTCTGTTTC-CTACCCAATTC-GGGAGATTAAA 613
Query 592 AGCAGCCTGGATTGGGTTAATCTTATGGCTTATGATTTTTACGGACCGGGTTGGTCCAGA 651
| | ||||||||||||| ||||| || |||||||| ||| | || |||| |
Sbjct 614 AAAAAATTGGATTGGGTTAACCTTATTGCCTATGATTTCTAC---TC---TTCATCCACA 667
Query 652 GTGACCGGTCCACCAGCCGCTCTGTTTGATCCTTCAAA--CG-CAGGTCCAAGCGGAGAC 708
| |||||||| ||||||||||||||||| ||||| || ||||||| | || |||
Sbjct 668 ACCATTGGTCCACCCGCCGCTCTGTTTGATCCCTCAAACCCGAAAGGTCCATGTGGGGAC 727
Query 709 -GCGG-GAGCAAGGTCA-TGGATTCAA-GCTGGACTTCCGGCGAAGAAAGCAGTCTTGGG 764
|| | || | | |||||| || || |||||||||||||||||||||||||||||
Sbjct 728 TATGGTTTG-AAAG--AGTGGATT-AAGGCCGGACTTCCGGCGAAGAAAGCAGTCTTGGG 783
Query 765 ATTTCCATAC-TACGGCT--ACGCGTGGCGTCTCACAAACGCTAACAGTCACAGCTACTA 821
|||||||||| | || | || | ||| |||| | || || || | | | |
Sbjct 784 ATTTCCATACGTT-GGATGGAC-C-TGGAGTCT-AGGAA-GCGG-CAAT----G--A-TG 830
Query 822 CGCGCCTACCA-CAGGAGCT-GCGATATCACCGGATGGTTCGAT-AGGTTACGGTCAGAT 878
|| ||| |||| | | || | || | |||| | || ||||| || | | ||| ||||||
Sbjct 831 CG-GCC-ACCAGCCG-AG-TAGCTACATCAGCTGAGGGTTCTATCAACT-ACGATCAGAT 885
Query 879 AAGGAAGTTTA-TAGTAGATAACGGAGCAACAACGGTTTATAACTCGACGGTGGTCGGAG 937
|| ||| ||| |||| ||| || ||||| | |||||| | ||||||||||||| ||||
Sbjct 886 AAA-AAGGTTAATAGTGGATCACAAAGCAAGACCGGTTTTTGACTCGACGGTGGTTGGAG 944
Query 938 ATTATTG-TTACGCCGGCACAACTTGGATTGGTTATGACGATAATCAGAGTATTGTGACG 996
|||| || || ||||| || | || |||||| || || ||| ||||||| | ||| |
Sbjct 945 ATTACTGCTTT-GCCGGGACGAGTTTGATTGGGTACGATGATCATCAGAGCGTCGTGGCT 1003
Query 997 AAAGTTAGATACGCTAAGCAGAGAGGTCTT-CTCGGTTACTTCTCGTGGCATGTTGGTGC 1055
||||| | ||||||||| |||| |||| || || ||||||||||| ||||||||||| ||
Sbjct 1004 AAAGTAAAATACGCTAAACAGAAAGGT-TTGCTTGGTTACTTCTCATGGCATGTTGGAGC 1062
Query 1056 TGACGATAATTCTGGTTTATCTCGTGCAGCTTC 1088
||| ||||||| ||| |||||||||||| |||
Sbjct 1063 TGATGATAATTTTGGCCTATCTCGTGCAGGTTC 1095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55923407130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5