BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329610
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19360.1 | Symbols: | SCD6 protein-related | chr4:10564159-... 678 0.0
> AT4G19360.1 | Symbols: | SCD6 protein-related | chr4:10564159-10565406
FORWARD LENGTH=807
Length=807
Score = 678 bits (367), Expect = 0.0
Identities = 540/620 (87%), Gaps = 25/620 (4%)
Strand=Plus/Plus
Query 1 ATGGAAACTGTAAGTTCTCATCAGTATCTTTCTCCATGGTCACCAGC-T-TCAAC-TCCT 57
||| ||||||| | | || |||| ||| |||| ||| ||||||| | | | | ||||
Sbjct 1 ATGAAAACTGTGA-CT-TC-TCAGCATCCTTCTTCATTGTCACCACCATCTTTTCTTCCT 57
Query 58 CCACAAATTCCCGTCGAAGCGTACATAGGAAGTTTCGTCACTATGATTTCTAACACCGAT 117
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 58 CCACAAATTCCCGTCGAAGCGTACATAGGAAGTTTCGTCACTCTGATTGCTAACTTCGAT 117
Query 118 CTACGTTACGAAGGCATTA-TATGTTTTCTCAATATTCAAGATTCGACTCTAGGTCTTCA 176
|||||||||||||||| | | |||||||||||| | ||||| |||||||||||||||||
Sbjct 118 ATACGTTACGAAGGCAT-ACTCTGTTTTCTCAATCTCCAAGAGTCGACTCTAGGTCTTCA 176
Query 177 AAACGTGATATGTTATGGTACAGAAGGAAGGAACACTAA-CGGATTTCAAGTTCCTCCGT 235
||||||| |||||||||| ||||||||||||||| | || |||| ||||| ||||||||
Sbjct 177 AAACGTGGTATGTTATGGAACAGAAGGAAGGAAC-CAAAACGGAGTTCAAATTCCTCCGG 235
Query 236 ATAATAAAGTTTACGA-TTACATTCTTTTCAACGGAAATGACTTTAAGGAGATAATAGTT 294
||| |||| || | || |||||||||||||||||||||| || ||||||| |||||||||
Sbjct 236 ATACTAAAATTCA-GAATTACATTCTTTTCAACGGAAATAACATTAAGGAAATAATAGTT 294
Query 295 AAGCCTCCTACTTGTGGTTATTGTTTAGCAATAGGATCTACATGTAGTAAAGCTTGTCTT 354
||||||||||||| || ||||||||| ||||||||||||||||||| ||||||||
Sbjct 295 CAGCCTCCTACTTG-GG-----GTTTAGCAAGAGGATCTACATGTAGTAAATCTTGTCTT 348
Query 355 GCCACAAAACCACCACTCCCTATAATTGTCTCACCAAACAATCGATCCGGTGCTAAGATA 414
||| |||| ||||| || ||||||||||||||||||||||||||||||| | |||||||
Sbjct 349 GCCCCAAACCCACCGCTTCCTATAATTGTCTCACCAAACAATCGATCCGACGATAAGATA 408
Query 415 CTCCAACAACTTCCATTGATCTCCAATGAAAATCTCAT-CATCCCTCAAGCTACA-ACAG 472
||||||||| ||||||||||||| |||||||||||||| || || ||||||| | ||||
Sbjct 409 CTCCAACAATTTCCATTGATCTCGAATGAAAATCTCATTCAACCG-CAAGCTA-AGACAG 466
Query 473 AGTCTAATGCTTTCTCAGTTAATGGATCAGTCAATGATAGATTACACATTGCTTCTCAAC 532
|||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 467 AGTCGAATGCTTTCTCAGTTAATGGATCAGTCAATGATAGATTTCCCATTGCTTCTCAAC 526
Query 533 AACGGTATCCTGGTTCATACTTCTATGACCCTTATGTTTACCAGTCTATGCCTTATGATG 592
|| || |||| | |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 527 CACAGTTTCCT--T-CATACTTCTATGACCCTTATGTTTACCAGTCTATGCCTTATGCTG 583
Query 593 GACTTAATCAAGCTCCTATA 612
||||| |||||||||||||
Sbjct 584 AACTTAGTCAAGCTCCTATA 603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42899961538
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5