BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg329610 Length=879 Score E Sequences producing significant alignments: (Bits) Value AT4G19360.1 | Symbols: | SCD6 protein-related | chr4:10564159-... 678 0.0 > AT4G19360.1 | Symbols: | SCD6 protein-related | chr4:10564159-10565406 FORWARD LENGTH=807 Length=807 Score = 678 bits (367), Expect = 0.0 Identities = 540/620 (87%), Gaps = 25/620 (4%) Strand=Plus/Plus Query 1 ATGGAAACTGTAAGTTCTCATCAGTATCTTTCTCCATGGTCACCAGC-T-TCAAC-TCCT 57 ||| ||||||| | | || |||| ||| |||| ||| ||||||| | | | | |||| Sbjct 1 ATGAAAACTGTGA-CT-TC-TCAGCATCCTTCTTCATTGTCACCACCATCTTTTCTTCCT 57 Query 58 CCACAAATTCCCGTCGAAGCGTACATAGGAAGTTTCGTCACTATGATTTCTAACACCGAT 117 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| Sbjct 58 CCACAAATTCCCGTCGAAGCGTACATAGGAAGTTTCGTCACTCTGATTGCTAACTTCGAT 117 Query 118 CTACGTTACGAAGGCATTA-TATGTTTTCTCAATATTCAAGATTCGACTCTAGGTCTTCA 176 |||||||||||||||| | | |||||||||||| | ||||| ||||||||||||||||| Sbjct 118 ATACGTTACGAAGGCAT-ACTCTGTTTTCTCAATCTCCAAGAGTCGACTCTAGGTCTTCA 176 Query 177 AAACGTGATATGTTATGGTACAGAAGGAAGGAACACTAA-CGGATTTCAAGTTCCTCCGT 235 ||||||| |||||||||| ||||||||||||||| | || |||| ||||| |||||||| Sbjct 177 AAACGTGGTATGTTATGGAACAGAAGGAAGGAAC-CAAAACGGAGTTCAAATTCCTCCGG 235 Query 236 ATAATAAAGTTTACGA-TTACATTCTTTTCAACGGAAATGACTTTAAGGAGATAATAGTT 294 ||| |||| || | || |||||||||||||||||||||| || ||||||| ||||||||| Sbjct 236 ATACTAAAATTCA-GAATTACATTCTTTTCAACGGAAATAACATTAAGGAAATAATAGTT 294 Query 295 AAGCCTCCTACTTGTGGTTATTGTTTAGCAATAGGATCTACATGTAGTAAAGCTTGTCTT 354 ||||||||||||| || ||||||||| ||||||||||||||||||| |||||||| Sbjct 295 CAGCCTCCTACTTG-GG-----GTTTAGCAAGAGGATCTACATGTAGTAAATCTTGTCTT 348 Query 355 GCCACAAAACCACCACTCCCTATAATTGTCTCACCAAACAATCGATCCGGTGCTAAGATA 414 ||| |||| ||||| || ||||||||||||||||||||||||||||||| | ||||||| Sbjct 349 GCCCCAAACCCACCGCTTCCTATAATTGTCTCACCAAACAATCGATCCGACGATAAGATA 408 Query 415 CTCCAACAACTTCCATTGATCTCCAATGAAAATCTCAT-CATCCCTCAAGCTACA-ACAG 472 ||||||||| ||||||||||||| |||||||||||||| || || ||||||| | |||| Sbjct 409 CTCCAACAATTTCCATTGATCTCGAATGAAAATCTCATTCAACCG-CAAGCTA-AGACAG 466 Query 473 AGTCTAATGCTTTCTCAGTTAATGGATCAGTCAATGATAGATTACACATTGCTTCTCAAC 532 |||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 467 AGTCGAATGCTTTCTCAGTTAATGGATCAGTCAATGATAGATTTCCCATTGCTTCTCAAC 526 Query 533 AACGGTATCCTGGTTCATACTTCTATGACCCTTATGTTTACCAGTCTATGCCTTATGATG 592 || || |||| | |||||||||||||||||||||||||||||||||||||||||| || Sbjct 527 CACAGTTTCCT--T-CATACTTCTATGACCCTTATGTTTACCAGTCTATGCCTTATGCTG 583 Query 593 GACTTAATCAAGCTCCTATA 612 ||||| ||||||||||||| Sbjct 584 AACTTAGTCAAGCTCCTATA 603 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42899961538 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5