BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329612
Length=1563
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19330.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1646 0.0
AT4G19250.1 | Symbols: | Galactose oxidase/kelch repeat superf... 483 3e-135
AT4G19260.1 | Symbols: | Galactose oxidase/kelch repeat superf... 189 7e-47
AT4G19340.1 | Symbols: | SCD6 protein-related | chr4:10559610-... 182 1e-44
AT5G28180.1 | Symbols: | Galactose oxidase/kelch repeat superf... 113 4e-24
AT4G39060.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 95.3 2e-18
> AT4G19330.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:10554982-10558675 FORWARD LENGTH=1614
Length=1614
Score = 1646 bits (891), Expect = 0.0
Identities = 1320/1522 (87%), Gaps = 50/1522 (3%)
Strand=Plus/Plus
Query 24 TTCATCATCTTCAACTACTCAGGAGAATCACGAAAAAAGGATCATCGGAGAGTTCGTCTC 83
||| |||||||||||| ||| |||| ||| | | | ||| |||||| |||||||| |
Sbjct 15 TTCGTCATCTTCAACTCCTCCGGAGGATCTTGTTACATCGATGATCGGAAAGTTCGTCGC 74
Query 84 CGTCACTATC-AACGACGGTAAACAATACGAAGGCATTATCT-GCCATATTAATCTTCAA 141
|||| | || ||| ||| | || |||||||||| |||| | ||| | | ||||| |||
Sbjct 75 TGTCA-TGTCTAACAACGACATACGATACGAAGGCGTTAT-TAGCCTTCTCAATCTGCAA 132
Query 142 GATTCGACGTTAGGTCTCCAAAACGGTAACCATTCGATTCCAAACCTTCTCCAAGATCCT 201
||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||| |
Sbjct 133 GATTCGAAATTAGGTCTCCAAAACGGTAACAATTCGATTCCAAACCCTCTCCAAGAT-C- 190
Query 202 AATTTACTGTTTCTGATTTTCTTCTTTTCAATTGTTA-GATGCTATGGAAGAGAGG-AGA 259
|||||||| ||||||||||||||||||| |||| | | ||||||||||||| |
Sbjct 191 ----TACTGTTTATGATTTTCTTCTTTTCAATCGTTAGGGT-TTATGGAAGAGAGGTTG- 244
Query 260 AGAATGATAATGAGCAACGAGTAATCCATGTTCTTAAAGAAGCTT-ACAGTTACATGCTT 318
|||||||||||||||||||||| |||| ||||||||||||| || ||||| ||||| |
Sbjct 245 AGAATGATAATGAGCAACGAGTGTTCCAGGTTCTTAAAGAAG-TTCACAGTCACATGGTA 303
Query 319 TTTAGCGGAAGTGACATTAAGTTACTCGAAGTTCTCTCTCTGCCAG-CACCACCAAAGCA 377
||||| |||||||||||||||| | ||||||||||||||||||| | ||||| | | |||
Sbjct 304 TTTAGAGGAAGTGACATTAAGTCAGTCGAAGTTCTCTCTCTGCC-GCCACCAGCTAGGCA 362
Query 378 TAAATCTGTC-ATAGGTCATC-TCGTTAG-TATAATAACTACCGGGGACGTGAGG-TGTG 433
||| |||| | ||||| || | | | ||| | | || ||||||| ||||||||| | ||
Sbjct 363 TAATTCTG-CTATAGGGCA-CGTAGGTAGCT-TGATTACTACCGAAGACGTGAGGAT-TG 418
Query 434 AGGGCCTAATCACCCACGTCAACTTTCGTGATTCTATGATATTCATGAAGAATGGTATGT 493
|||| | |||| ||| || || |||| |||||| |||||||||||||||||| ||||||
Sbjct 419 AGGGGGTTATCAGCCATGTTAAATTTCATGATTCGATGATATTCATGAAGAATTGTATGT 478
Query 494 GTTATGGTACTGAGGGGAGGACGAAGAGAAGACGTTCAATAGTAGCTTGCAAACAATTGG 553
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 479 GTTATGGTACTGAGGGGAGGACGAAGAGAAGACGTTCAATAGTAGCTTGCAATCAATTAG 538
Query 554 CTGATGACATTATTTTGAATATCTTGGCTCGCATATCCACTTCGTACTACCCAACGCTCT 613
|||||||||| ||||||||||||||||||||||||| ||||| ||||||| ||||||||
Sbjct 539 CTGATGACATCGTTTTGAATATCTTGGCTCGCATATCTACTTCCTACTACCAAACGCTCT 598
Query 614 CTCTTGTCTCCAAGAGCTTCCGCTGGCTCATCCTCTCTGAGGAGCTCGACATGGAACGTT 673
||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||
Sbjct 599 CTCTTGTCTCCAAGACCTTCCGTTTGCTCATCCTCTCCAAGGAGCTCGACATGGAACGTT 658
Query 674 CCTACCTTGGAACCCGAAAACAATGTGTTTACGTCTGCTTTCAATCTCCCAGCCATCCTT 733
||||||||||||||||||||| ||||||||| |||||| |||||||||||| ||||||||
Sbjct 659 CCTACCTTGGAACCCGAAAACCATGTGTTTATGTCTGCCTTCAATCTCCCACCCATCCTT 718
Query 734 TTGGTCGTAGATGGTTCAGTCTCTGGATAAAACCCTGCGATCATCAACCCCTAACCCATT 793
||| ||||||||||||| |||||||||||||||||| |||||||| |||||||||||||
Sbjct 719 TTGATCGTAGATGGTTCGGTCTCTGGATAAAACCCTATGATCATCAGCCCCTAACCCATT 778
Query 794 GGACGATCGACATCAAGTGTACCGGACACTGGTTGCTACCGATGCCCTCTTCATACTCTC 853
|||||||||||||||||||||||||||| ||||||||||||||||||||| | || ||||
Sbjct 779 GGACGATCGACATCAAGTGTACCGGACATTGGTTGCTACCGATGCCCTCTCCCTATTCTC 838
Query 854 GTCGCTTACAAACACTCCACGAAACTATTGGTTCAGAAACATACGAAATCGGTGGACAAA 913
|| ||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 839 GTTGCTTACAAATAGTCCACGAAACTGTTGGTTCAGAAACATACGAAATCGGTGGACAAA 898
Query 914 ACACG-CTGCCCTCAACCGACGTGTGGGTCTATGATAAGCTTATTGGCAAACGGTGCAAA 972
||| | | ||||| || ||||| ||||||||||||||||| |||||||||| |||||
Sbjct 899 ACATGACA-CCCTCGACTGACGTATGGGTCTATGATAAGCTCATTGGCAAACAACGCAAA 957
Query 973 GGC-CCTAGCATGATGGTGGCTCGTAAGAATGCCCTTACATGCG-CACTTGATGGGAAAC 1030
| | |||||||||||||||||||||||||| ||| |||| |||| | |||||||| ||||
Sbjct 958 G-CTCCTAGCATGATGGTGGCTCGTAAGAACGCCTTTACGTGCGTC-CTTGATGGAAAAC 1015
Query 1031 TATATGTAATGGGAGGATGTGAAGCAGATGATACC-ACGCATTGGGCTGA-GCTTTTCGA 1088
||||||||||||||||||||||||| ||||| | | || ||||||||||| | |||||||
Sbjct 1016 TATATGTAATGGGAGGATGTGAAGCGGATGA-ATCTACTCATTGGGCTGAAG-TTTTCGA 1073
Query 1089 CCCAAAGACTCAAACTTGGGAAGCTTTACCGGATCCTGGTGTTGAGCTCCGGTCCTCTTC 1148
|||||||||||||||||||||||| || ||||||||||| ||||||||||||| ||||||
Sbjct 1074 CCCAAAGACTCAAACTTGGGAAGCATTGCCGGATCCTGGAGTTGAGCTCCGGTACTCTTC 1133
Query 1149 AGTTAAA-AAGCTCCAAACGAAGCAAGGAAAAGTTTACGTGAGGAGCAATGTGAAGAATT 1207
||| ||| || |||||||||||||||||||||| ||||||||||||||| |||||| |
Sbjct 1134 AGT-AAAGAATATCCAAACGAAGCAAGGAAAAGTGTACGTGAGGAGCAATAAGAAGAACT 1192
Query 1208 TTGTTTACCTTACAAAAGAAAGTAGGTGGGAAGTTGCTGAGGGAAACTTAGGTGACCGTG 1267
|||||||||||| |||||| ||| |||||||||||| |||| |||||| || | ||
Sbjct 1193 TTGTTTACCTTATAAAAGAGTGTATGTGGGAAGTTGCCGAGGAAAACTT-GG-G----TG 1246
Query 1268 AGAGTATGTGTGAGATAGAGAATGTATGCTACTCTTAT-GCTAATAAAAAATGTTGGTGG 1326
|||||| ||||||||||||||||||||||||| |||| | |||||||| || ||||||
Sbjct 1247 AGAGTACCTGTGAGATAGAGAATGTATGCTACTGTTATAG-TAATAAAAGATACTGGTGG 1305
Query 1327 TATGACACAAAATGTGAAGGGTGGAGATCGGTCAAAGGTACTGATGGTGGAAAACTCGTA 1386
|||||| |||| ||||||| |||||||| |||||||||| | ||||||||||||| ||
Sbjct 1306 TATGACGCAAAGTGTGAAGAGTGGAGATTAGTCAAAGGTAATTATGGTGGAAAACTTGTT 1365
Query 1387 GTCTTTTGGGACCGTGTGG-GTTCTCGTATTA-CTGCAACCAAAGAAATTTGGTGTGCTA 1444
|||||||||||||||| || || ||||| ||| | |||||||||||||||||||||||||
Sbjct 1366 GTCTTTTGGGACCGTGCGGTGT-CTCGT-TTAACCGCAACCAAAGAAATTTGGTGTGCTA 1423
Query 1445 TGATTTCGCTTAAAAAGGAACCTGATGGTGAAGTTTGGGGTCACGTTGAGTGGCTTGATG 1504
||||||| ||| |||||| || |||||||||| | ||||||||| | || ||||||||||
Sbjct 1424 TGATTTCTCTTGAAAAGGGACATGATGGTGAAATCTGGGGTCACATCGAATGGCTTGATG 1483
Query 1505 CTGTGCTTATAGCCCCTCGGTC 1526
||||||||||||||||||||||
Sbjct 1484 CTGTGCTTATAGCCCCTCGGTC 1505
> AT4G19250.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:10531504-10532190 FORWARD LENGTH=687
Length=687
Score = 483 bits (261), Expect = 3e-135
Identities = 390/450 (87%), Gaps = 18/450 (4%)
Strand=Plus/Plus
Query 922 CCCTCAACCGACGTGTGGGTCTATGATAAGCTTATTGGCAAACGGTGCAAAGGC-CCTAG 980
||||| || ||||| ||||||||||||||||| |||||||||| ||||| || |||||
Sbjct 7 CCCTCGACTGACGTATGGGTCTATGATAAGCTCATTGGCAAACAACGCAAA-GCTCCTAG 65
Query 981 CATGATGGTGGCTCGTAAGAATGCCCTTACATGCG-CACTTGATGGGAAACTATATGTAA 1039
||||||||||||||||| ||| ||| |||| |||| | |||||||| |||||||||||||
Sbjct 66 CATGATGGTGGCTCGTACGAACGCCTTTACGTGCGTC-CTTGATGGAAAACTATATGTAA 124
Query 1040 TGGGAGGATGTGAAGCAGATGATACC-ACGCATTGGGCTGA-GCTTTTCGACCCAAAGAC 1097
|||||||||||||||| ||||| | | || ||||||||||| | ||||||||||||||||
Sbjct 125 TGGGAGGATGTGAAGCGGATGA-ATCTACTCATTGGGCTGAAG-TTTTCGACCCAAAGAC 182
Query 1098 TCAAACTTGGGAAGCTTTACCGGATCCTGGTGTTGAGCTCCGGTCCTCTTCAGTTAAA-A 1156
||||||||||||||| || ||||||||||| ||||||||||||| ||||||||| ||| |
Sbjct 183 TCAAACTTGGGAAGCATTGCCGGATCCTGGAGTTGAGCTCCGGTACTCTTCAGT-AAAGA 241
Query 1157 AGCTCCAAACGAAGCAAGGAAAAGTTTACGTGAGGAGCAATGTGAAGAATTTTGTTTACC 1216
| |||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||
Sbjct 242 ATATCCAAACGAAGCAAGGAAAAGTGTACGTGAGGAGCAATAAGAAGAACTTTGTTTACC 301
Query 1217 TTACAAAAGAAAGTAGGTGGGAAGTTGCTGAGGGAAACTTAGGTGACCGTGAGAGTATGT 1276
||| |||||| ||| |||||||||||| |||| |||||| || | |||||||| |
Sbjct 302 TTATAAAAGAGTGTATGTGGGAAGTTGCCGAGGAAAACTT-GG-G----TGAGAGTACCT 355
Query 1277 GTGAGATAGAGAATGTATGCTACTCTTAT-GCTAATAAAAAATGTTGGTGGTATGACACA 1335
|||||||||||||||||||||||| |||| | |||||||| || |||||||||||| ||
Sbjct 356 GTGAGATAGAGAATGTATGCTACTGTTATAG-TAATAAAAGATACTGGTGGTATGACGCA 414
Query 1336 AAATGTGAAGGGTGGAGATCGGTCAAAGGT 1365
|| ||||||| |||||||| |||||||||
Sbjct 415 AAGTGTGAAGAGTGGAGATTAGTCAAAGGT 444
Score = 226 bits (122), Expect = 5e-58
Identities = 177/203 (87%), Gaps = 6/203 (3%)
Strand=Plus/Plus
Query 1362 AGGTACTGATGGTGGAAAACTCGTAGTCTTTTGGGACCGTGTGGGT-TCTCGTATT-ACT 1419
||||| | ||||||||||||| || |||||||||||||||| ||| |||||| || ||
Sbjct 486 AGGTAATTATGGTGGAAAACTTGTTGTCTTTTGGGACCGTG-CGGTGTCTCGT-TTAACC 543
Query 1420 GCAACCAAAGAAATTTGGTGTGCTATGATTTCGCTTAAAAAGGAACCTGATGGTGAAGTT 1479
|||||||||||||||||||||||||||||||| ||| |||||| || |||||||||| |
Sbjct 544 GCAACCAAAGAAATTTGGTGTGCTATGATTTCTCTTGAAAAGGGACATGATGGTGAAATC 603
Query 1480 TGGGGTCACGTTGAGTGGCTTGATGCTGTGCTTATAGCCCCTCGGTCGTATACATTCTTG 1539
||||||||| | || |||||||||||||||||||||||||||||||||||| || |||
Sbjct 604 TGGGGTCACATCGAATGGCTTGATGCTGTGCTTATAGCCCCTCGGTCGTATGCACTCTCA 663
Query 1540 CATTGTATGGAAT-CATTGCAAT 1561
||||||||||| | | |||||||
Sbjct 664 CATTGTATGGACTTC-TTGCAAT 685
> AT4G19260.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:10533296-10536262 FORWARD LENGTH=867
Length=867
Score = 189 bits (102), Expect = 7e-47
Identities = 145/165 (88%), Gaps = 6/165 (4%)
Strand=Plus/Plus
Query 869 TCCACGAAACTATTGGTTCAGAAACATACGAAATCGGTGGACAAAACACG-CTGCCCTCA 927
||||||||||| |||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 689 TCCACGAAACTGTTGGTTCAGAAACATACGAAATCGGTGGACAAAACATGACA-CCCTCG 747
Query 928 ACCGACGTGTGGGTCTATGATAAGCTTATTGGCAAACGGTGCAAAGGC-CCTAGCATGAT 986
|| ||||| ||||||||||||||||| |||||||||| |||||| | |||||||||||
Sbjct 748 ACTGACGTATGGGTCTATGATAAGCTCATTGGCAAACAACGCAAAG-CTCCTAGCATGAT 806
Query 987 GGTGGCTCGTAAGAATGCCCTTACATGCG-CACTTGATGGGAAAC 1030
||||||||||||||| ||| |||| |||| | |||||||| ||||
Sbjct 807 GGTGGCTCGTAAGAACGCCTTTACGTGCGTC-CTTGATGGAAAAC 850
Score = 182 bits (98), Expect = 1e-44
Identities = 158/186 (85%), Gaps = 8/186 (4%)
Strand=Plus/Plus
Query 375 GCATAAATCTGTC-ATAGGTCATC-TCGTTAG-TATAATAACTACCGGGGACGTGAGG-T 430
|||||| |||| | ||||| || | | | ||| | | || ||||||| ||||||||| |
Sbjct 372 GCATAATTCTG-CTATAGGGCA-CGTAGGTAGCT-TGATTACTACCGAAGACGTGAGGAT 428
Query 431 GTGAGGGCCTAATCACCCACGTCAACTTTCGTGATTCTATGATATTCATGAAGAATGGTA 490
|||||| | |||| ||| || || |||| |||||| |||||||||||||||||| |||
Sbjct 429 -TGAGGGGGTTATCAGCCATGTTAAATTTCATGATTCGATGATATTCATGAAGAATTGTA 487
Query 491 TGTGTTATGGTACTGAGGGGAGGACGAAGAGAAGACGTTCAATAGTAGCTTGCAAACAAT 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 488 TGTGTTATGGTACTGAGGGGAGGACGAAGAGAAGACGTTCAATAGTAGCTTGCAATCAAT 547
Query 551 TGGCTG 556
| ||||
Sbjct 548 TAGCTG 553
> AT4G19340.1 | Symbols: | SCD6 protein-related | chr4:10559610-10560884
FORWARD LENGTH=699
Length=699
Score = 182 bits (98), Expect = 1e-44
Identities = 158/186 (85%), Gaps = 8/186 (4%)
Strand=Plus/Plus
Query 375 GCATAAATCTGTC-ATAGGTCATC-TCGTTAG-TATAATAACTACCGGGGACGTGAGG-T 430
|||||| |||| | ||||| || | | | ||| | | || ||||||| ||||||||| |
Sbjct 372 GCATAATTCTG-CTATAGGGCA-CGTAGGTAGCT-TGATTACTACCGAAGACGTGAGGAT 428
Query 431 GTGAGGGCCTAATCACCCACGTCAACTTTCGTGATTCTATGATATTCATGAAGAATGGTA 490
|||||| | |||| ||| || || |||| |||||| |||||||||||||||||| |||
Sbjct 429 -TGAGGGGGTTATCAGCCATGTTAAATTTCATGATTCGATGATATTCATGAAGAATTGTA 487
Query 491 TGTGTTATGGTACTGAGGGGAGGACGAAGAGAAGACGTTCAATAGTAGCTTGCAAACAAT 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 488 TGTGTTATGGTACTGAGGGGAGGACGAAGAGAAGACGTTCAATAGTAGCTTGCAATCAAT 547
Query 551 TGGCTG 556
| ||||
Sbjct 548 TAGCTG 553
> AT5G28180.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:10162783-10163943 FORWARD LENGTH=1059
Length=1059
Score = 113 bits (61), Expect = 4e-24
Identities = 116/141 (82%), Gaps = 9/141 (6%)
Strand=Plus/Plus
Query 1022 ATGGGAAACTATATGTAATGGGAGGATGTG-AAGCA-GATG-ATACCACGCATTGGGCTG 1078
|||||||||||||||| |||||||| | || | | | |||| || || | |||||| ||
Sbjct 584 ATGGGAAACTATATGTCATGGGAGG-T-TGCAGGGATGATGAAT-CCGTGAATTGGGGTG 640
Query 1079 AGCTTTTCGACCCAAAGACTCAAACTTGGGAAGCTTTACCGGATCCTGG-TGTTGAGCTC 1137
|| |||| |||||||||||||||||||||||||||||||| || ||||| | | ||||||
Sbjct 641 AGGTTTTTGACCCAAAGACTCAAACTTGGGAAGCTTTACCTGACCCTGGCTCT-GAGCTC 699
Query 1138 CGGTCCTCTTCAGTTA-AAAA 1157
|| | |||||| ||| ||||
Sbjct 700 CGTTTTTCTTCAATTAGAAAA 720
> AT4G39060.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Galactose oxidase/kelch repeat superfamily protein
(TAIR:AT4G19250.1); Has 375 Blast hits to 365 proteins in 7
species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants
- 367; Viruses - 0; Other Eukaryotes - 6 (source: NCBI
BLink). | chr4:18202607-18204634 FORWARD LENGTH=1107
Length=1107
Score = 95.3 bits (51), Expect = 2e-18
Identities = 81/95 (85%), Gaps = 3/95 (3%)
Strand=Plus/Plus
Query 1066 ACGCATTGGGCTGAGCTTTTCGACCCAAAGACTCAAACTTGGGAAGCTTTACCGGATCCT 1125
||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 441 ACGAATTGGGCTGAGGTTTTCGACCCAAAGACTCAAACTTGGGAACCTTTACCGGACCCT 500
Query 1126 GGTGT-TGAGCTCCGG-TCCTCTTCAGTTAAAAAG 1158
|| |||| ||||| || |||| | |||||||
Sbjct 501 GGCCCCTGAGGTCCGGCTC-TCTTTAAATAAAAAG 534
Score = 86.1 bits (46), Expect = 1e-15
Identities = 76/90 (84%), Gaps = 4/90 (4%)
Strand=Plus/Plus
Query 562 ATTATTTTGAATATCTTGGCTCGCATATCCACT-TCGTACTACCCAACGCTCTCTCTTGT 620
||| |||||| | ||||||||| |||| | | ||||||||||||| ||||||||||||
Sbjct 107 ATTGTTTTGAGCAGCTTGGCTCG--TATCGA-TATCGTACTACCCAAAGCTCTCTCTTGT 163
Query 621 CTCCAAGAGCTTCCGCTGGCTCATCCTCTC 650
||||||||||||||||| | | |||||||
Sbjct 164 CTCCAAGAGCTTCCGCTCGTTGGTCCTCTC 193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77158237665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5