BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329616
Length=3756
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19191.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2867 0.0
AT4G19190.1 | Symbols: | zinc knuckle (CCHC-type) family prote... 2715 0.0
AT3G13770.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 54.7 7e-06
> AT4G19191.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:10496228-10498192 FORWARD LENGTH=1965
Length=1965
Score = 2867 bits (1552), Expect = 0.0
Identities = 1838/1976 (93%), Gaps = 19/1976 (1%)
Strand=Plus/Plus
Query 1789 ATGTCCTTGATTCATCGTCGGTTAAAGT-GT-TTTCCTGGATTGTCGTCTGTTAATGCTT 1846
|||||||||||||| || ||| || | | || | | ||||||| ||||||||||||||||
Sbjct 1 ATGTCCTTGATTCACCGACGGCTATA-TCGTATAT-CTGGATTATCGTCTGTTAATGCTT 58
Query 1847 GGAACTTT-CAAG-TACGTGAAGCGGTTAATCGAAATGATCCGGTGGAATCACTTCTTCT 1904
|||| ||| | || |||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 59 GGAA-TTTGC-AGATACGAGAAGCGGTTAATAGAAATGATCCGGTGGAATCACTTCTTCT 116
Query 1905 GTTTCGAGAAATGAAGCGCGGAGGATTTGAACCGAACAACTTTACTTTTCCATTTGTGGC 1964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 GTTTCGAGAAATGAAGCGCGGAGGATTTGAACCGAACAACTTTACTTTTCCATTTGTGGC 176
Query 1965 GAAGGCGTGTGCTAGGCTCGCTTATATTGGGTACTGTGAGATGGTTCATACCCATTTGAT 2024
|||||||||||||||||||||| || |||||| |||||||||||||||| | ||||||||
Sbjct 177 GAAGGCGTGTGCTAGGCTCGCTGATGTTGGGTGCTGTGAGATGGTTCATGCACATTTGAT 236
Query 2025 AAAGTCTCCGTTTTGGTCTGATGTTTTCGTTGGGACAGCGACGGTTGATATGTTTGTAAA 2084
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 237 AAAGTCTCCGTTTTGGTCTGATGTGTTCGTTGGGACAGCGACGGTTGACATGTTTGTGAA 296
Query 2085 ATGTGATTCTCTGGATTATGCCGCCAAGGTGTTTGAGAGAATGCCTGTGAGAGATGCTAC 2144
|||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 297 ATGTAATTCTGTGGATTATGCCGCCAAGGTGTTTGAGAGAATGCCTGAGAGAGATGCTAC 356
Query 2145 CACTTGGAACGCAATGCTGTCTGGTTTCTGTCAGTCGGGTCACACGGATAAGGTGTTTTC 2204
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 357 CACTTGGAACGCAATGCTGTCTGGTTTCTGTCAGTCGGGTCACACGGATAAGGCGTTTTC 416
Query 2205 AT-TATTTCGTGAAATGAGGCTCGACGAGATCCCACCTGATTCTGTGACTGTTATGACCT 2263
| |||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||
Sbjct 417 -TCTATTTCGTGAAATGAGACTCAACGAGATTACACCTGATTCTGTGACTGTTATGACCT 475
Query 2264 TGATTCAATCTGCATCGTTTGAAAAAAGTTTGAAGCTTTTGAAGG-TCATGCATGCTTTT 2322
||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| ||
Sbjct 476 TGATTCAATCTGCATCGTTTGAAAAAAGTTTGAAGCTTTTGGAGGCT-ATGCATGCGGTT 534
Query 2323 GGGATACGTTTAGGTGTAGATTTACAAGCTACAGTTTCCAATACTTGGATTTCTGCTTAT 2382
||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| |||||
Sbjct 535 GGGATACGTTTAGGTGTAGATGTACAAGTTACAGTTGCCAATACTTGGATTTCTACTTAT 594
Query 2383 GGGAAATGTGGTGATTTGGATTCAGCAAAGTTAGTTTTCGAAGCTATTGACAGAGGTGAC 2442
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 595 GGGAAATGTGGTGATTTGGATTCAGCAAAGTTGGTTTTCGAAGCTATTGACAGAGGTGAC 654
Query 2443 AGAACTGTTGTGTCTTGGAACTCTGTGTTCAAAGCAT-TTGCAGTTTTTGGTGAAGCATT 2501
|||||||||||||||||||| ||| |||||||||||| || |||||||||||||||||||
Sbjct 655 AGAACTGTTGTGTCTTGGAATTCTATGTTCAAAGCATATT-CAGTTTTTGGTGAAGCATT 713
Query 2502 TGATGCTTTTGGTCACTACCGGTTAATGCTGCGTGATGAGTTTAAGCCGGATTTGAGCAC 2561
|||||||||||||| ||| | || ||||||||||| |||||||||||||||||||| ||
Sbjct 714 TGATGCTTTTGGTCTTTACTGTTTGATGCTGCGTGAAGAGTTTAAGCCGGATTTGAGTAC 773
Query 2562 CTTTATTAACTTGGCTGCATCGTGTCAAAACCCTCAAACACTAACCCAAGGAAGATTGAT 2621
|||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||
Sbjct 774 GTTTATTAACTTGGCTGCATCGTGTCAGAACCCTGAAACACTAACACAAGGAAGATTGAT 833
Query 2622 TCATTCTCATGCAATCCATCTCGGTACAGATCAAGATATCGAAGCGATTAATACCTTCAT 2681
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 834 TCATTCTCATGCAATCCATCTCGGTACAGATCAAGATATAGAAGCGATCAATACCTTTAT 893
Query 2682 TTCTATGTATTCGAAATCCGGGGATTCCTGTTCAGCGAGGCTTTTGTTTGACATAATGCC 2741
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
Sbjct 894 TTCTATGTATTCGAAATCCGAGGATACCTGTTCAGCGAGGCTTTTGTTTGACATAATGAC 953
Query 2742 TTCCAGAACATGTGTTTCTTGGACTGTGATGATAAGTGGGTATGCCGAGAAAGGG-GATA 2800
|||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| || |
Sbjct 954 TTCCAGAACATGTGTTTCTTGGACTGTGATGATAAGCGGGTATGCTGAGAA-GGGCGACA 1012
Query 2801 TGGATGAAGCTTTGGCCTTATTTCATGCCATGGCCAAAACTGGAGTGAATCCAGATTTAG 2860
|||||||||||||||||||||||||||||||| |||| | |||| ||| |||||| |||
Sbjct 1013 TGGATGAAGCTTTGGCCTTATTTCATGCCATGATCAAATCAGGAGAGAAACCAGATCTAG 1072
Query 2861 TTACCTTACTCTCCCTCATTTCAGGTTGTGGAAAATTTGGTTCACTGGAGATTGGAAAAT 2920
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1073 TTACCTTACTCTCCCTCATTTCAGGTTGTGGAAAATTTGGTTCACTTGAGACTGGAAAAT 1132
Query 2921 GGATCGATGGTAGAGCAGATATGTACGGTTGCAAGAAAGATAATGTCATGGTTTGCAATG 2980
|||| |||| |||||||||||| || || ||||||| ||||||||||||| |||||||||
Sbjct 1133 GGATAGATGCTAGAGCAGATATATATGGGTGCAAGAGAGATAATGTCATGATTTGCAATG 1192
Query 2981 CTCTTATTGATATGTACTCAAAATGTGGAAGTATAGACGAAGCTCGAGACATCTTCGATA 3040
||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||
Sbjct 1193 CTCTTATTGATATGTACTCAAAATGTGGAAGTATACATGAAGCTCGAGACATATTCGATA 1252
Query 3041 ACACGTCTGAGAAAACTATGGTCACATGGACTACAATGATAGCTGGATATGCTTTGAACG 3100
||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 ACACGCCTGAGAAAACTGTTGTCACATGGACTACAATGATAGCTGGATATGCTTTGAACG 1312
Query 3101 GAATCTTCCTAGAAGCTATGGAACTTTTCAGCAAGATGATAGATTTGGATTATAAACCAA 3160
| ||||| || |||||| || ||||||| |||||||||||||||||||||||||||||||
Sbjct 1313 GTATCTTTCTCGAAGCTTTGAAACTTTTTAGCAAGATGATAGATTTGGATTATAAACCAA 1372
Query 3161 ACCACATAACATTCCTTGCCGTCCTTCAAGCTTGTGCTCATTCGGGTTCTCTAGAAAAAG 3220
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1373 ACCACATAACATTCCTTGCCGTCCTTCAAGCTTGTGCTCATTCGGGTTCTCTGGAGAAAG 1432
Query 3221 GTTGGGAGTATTTCCACATCATGAAACAAGTATACAACATCAGTCCTGGACTAGACCATT 3280
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1433 GTTGGGAGTATTTCCACATCATGAAACAAGTATACAACATCAGCCCTGGACTAGACCATT 1492
Query 3281 ACTCTTGTATGGTAGATCTTCTTGGAAGAAAAGGAAAGCTCGACGAAGCATTAGAACTCA 3340
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1493 ACTCTTGTATGGTAGATCTTCTTGGAAGAAAAGGAAAGCTCGAAGAAGCATTAGAACTCA 1552
Query 3341 TCCATAACATGTCAGCTAAACCCGATGCTGGCATATGGGGAGCATTGCTTAGTGCCTGCA 3400
||| |||||||||||||||||||||||||||||||||||| |||||||| | ||||||||
Sbjct 1553 TCCGTAACATGTCAGCTAAACCCGATGCTGGCATATGGGGTGCATTGCTAAATGCCTGCA 1612
Query 3401 AGATCCACCGTAATGTAAAGATAGCTGAGCAAGCGGCTGACAGTCTCTTTAACTTGGAAC 3460
|||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||
Sbjct 1613 AGATCCACCGTAATGTAAAGATAGCTGAGCAAGCCGCTGAGAGTCTTTTTAACTTAGAAC 1672
Query 3461 CGCAAATGGCAGCACCTTATGTAGAAATGTCAAACATATATGCAGCTGCTGGTATGTGGG 3520
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1673 CGCAAATGGCAGCTCCTTATGTAGAAATGGCAAACATATATGCAGCTGCTGGTATGTGGG 1732
Query 3521 ATGGTTTTGCGAGGATCAGATCAATGATGAAACTCTGGAACATTAAGAAGTATCCAGGTG 3580
|||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1733 ATGGTTTTGCGAGGATTAGATCAATTATGAAACAGAGGAACATTAAGAAGTATCCAGGTG 1792
Query 3581 AAAGCGTGATTCAAGTGAACGGAAAAAATCACACTTTCACTGTAGGAGAACGTGGTCATA 3640
|||||||||| || || |||||||| ||||||| ||||||||||||||||| |||||||
Sbjct 1793 AAAGCGTGATCCAGGTAAACGGAAAGAATCACAGTTTCACTGTAGGAGAACATGGTCATG 1852
Query 3641 TGGAGAATGAAGCCATATACTCTACGCTGAATGGTTTGAGTTTGTTTGCGAGAGATGAAA 3700
| |||||||||| |||||||| ||||||||||||||||||||||||||| | |||| |||
Sbjct 1853 TAGAGAATGAAGTCATATACTTTACGCTGAATGGTTTGAGTTTGTTTGCCAAAGAT-AAA 1911
Query 3701 AACAAATATTGCATAAAGATGTGTACAAAGAACAGAGTTATAAAGTTTTCATTTGA 3756
|| ||||| |||||||||||||||||||||| |||||| || |||||||||||
Sbjct 1912 CACG--TATTGTATAAAGATGTGTACAAAGAACAAAGTTATGAACTTTTCATTTGA 1965
> AT4G19190.1 | Symbols: | zinc knuckle (CCHC-type) family protein
| chr4:10493247-10496160 FORWARD LENGTH=2055
Length=2055
Score = 2715 bits (1470), Expect = 0.0
Identities = 1693/1796 (94%), Gaps = 33/1796 (2%)
Strand=Plus/Plus
Query 1 ATGGACGGCGAAGGGGAAGGAAGCGGAATACGGCTGAGCAAGAGATTCGCCGGCGGGAAG 60
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 77 ATGGACGGCGAAGGGGAAGGGAGCGGAATACGGCTGAGCAAGAGATTCGCTGGCGGGAAG 136
Query 61 GTCACCGGCGGTAGCTTAGAAGTTGATTACAAGACCAAATCCGGTACCGCTTGGAGCCAC 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 137 GTCACCGGCGGTAGCTTAGAAGTCGATTACAAGACCAAATCCGGTACCGCTTGGAGCCAC 196
Query 121 TCTTTCCTGAACCAGAAGCCATGGCATCCTCTTTCTTATCCCAATCAGCGCCGCAAATGG 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 TCTTTCCTGAATCAGAAGCCATGGCATCCTCTTTCTTATCCCAATCAGCGCCGCAAATGG 256
Query 181 ATCGCCGAGCAGACTCACGCCCAACACGATCGCAGAGCCGAAGAAGTGGCCCGCGAGTTT 240
||||||||||||||||| |||||||||||||| ||||| ||||| ||||| |||||||||
Sbjct 257 ATCGCCGAGCAGACTCATGCCCAACACGATCGAAGAGCGGAAGAGGTGGCTCGCGAGTTT 316
Query 241 GCGCAAGAGCAGGAATTCTTCAAGCAAGCAGCTCTCATCTCCAAGAAAGAAAGAGAGAAG 300
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 317 GCGCAAGAGCAGGAATTTTTCAAGCAAGCAGCTCTTATCTCGAAGAAAGAAAGAGAGAAG 376
Query 301 ATTGAAACGATGAAAGCTGTGAGCTTTATGTATGTTCGTCCACCTGGCTATGATCCTGAA 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 ATCGAAACGATGAAAGCTGTGAGCTTTATGTATGTTCGTCCACCTGGCTATGATCCTGAA 436
Query 361 AGTGCCAAAGCAGCAGAATACGCA-GATGAGAAACACAAGGGTCAGGGTTCTTCAACTCA 419
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 437 AGTGCCAAAGCAGCAGAATAC-AAGGATGAGAAACACAAGGGTCAGGGTTCTTCAACTCA 495
Query 420 GGATCCAATGGCGGAAGACAATGTTGGTTCTAGACCAGAAGAATCACAAGGCGGGGGAGA 479
||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 496 GGATCCAGTGGCGGACGACAATGTTGGTTCTAGACCAGAAGAATCACAAGGTGGGGGAGA 555
Query 480 CCGCACAGGTCAGGAAAGGAAGAAACCACGACCCAAAGATGTGTTTGGGCGTGCTCTTCC 539
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 556 ACGCACA---CAGGAAAGGAAGAAACCACGACCCAAAGATGTGTTTGGTCGTGCTCTTCC 612
Query 540 TACTGAAGAAGAATTTGAGGTCCTTAAAAATGCACCAAGGATGGAGACTGGTATTCCTGG 599
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 613 TACTGAAGAAGAATTTGAGGTTCTTAAAAATGCACCAAGGATGGAGACTGGTATTCCTGG 672
Query 600 GCGTGTAAAGCCATTTGCAGTTGAAGTGCGTAATGTGAAATGTCTGAGATGTGGAAACTT 659
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 GAGAGTAAAGCCATTTGCAGTTGAAGTGCGTAATGTGAAATGTCTGAGATGTGGAAACTT 732
Query 660 TGGGCATCAAAGCGGTGATCGTGACTGTCCATTAAAGGATGCAGTAATGCCAAATGAAGA 719
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 733 TGGGCACCAAAGCGGTGATCGTGACTGCCCATTAAAGGATGCAGTAATGCCAAATGAAGA 792
Query 720 ACTTCGATTGAAAAGAGATGATCCGTTGACTGCTATCATTGCACATACAGATCCCAGTGA 779
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 793 ACTTCGATTGAAAAGAGATGACCCGTTGACTGCTATCATTGCACATACAGATCCTAGTGA 852
Query 780 GCCTCTGAAGTGGGAGTTGAAACAAAAGTCC-GGCTTGAGTCCTCCTCGTGGAGGTTTTG 838
||||||||||||||| || ||||||||| || |||||||||||||||||||| |||||||
Sbjct 853 GCCTCTGAAGTGGGAATTAAAACAAAAG-CCGGGCTTGAGTCCTCCTCGTGGTGGTTTTG 911
Query 839 ATCCTGATGATCCAAATCAACAAATCGTCGCTGAAGATATATTTGATGAATATGGAGGGT 898
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 912 ATCCTGATGATCCAAATCAACAAATCGTCGCTGAAGATATATTTGACGAATATGGAGGGT 971
Query 899 TCCTTGAGGGCAGCATCCCAATAGAATTACTGAAGAGTATGTCGTCGGATaagaaaagaa 958
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 972 TCCTTGAGGGCAGCATCCCAATAGAAATACTGAAGAGTATGTCGTCGGATAAGAAAAGAA 1031
Query 959 aatccaaaaagaacaaaaagCACAAGAAGCATTCATCTCGGACTATTGAGGAAACTGATG 1018
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1032 AATCCAAAAAGAACAAAAGGCACAAGAAGCATTCATCTCGGACTGTTGAGGAAACTGATG 1091
Query 1019 AATCTTCAACAGGCTCGgaagatagtagagagaagaggggatcgaagaagcggaagaaac 1078
|||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1092 AATCTTCAACAGGCTCAGAAGATAGTAGAGAGAAGAGGGGATCAAAGAAGCGCAAGAAAC 1151
Query 1079 ttaagaagaagagcaagaagCATTATGATTCTGACTCACTCTCCTCTGAAGATTCAGACT 1138
|||||||||||||||||||||| ||||||||||| |||||||||| ||||| ||||| ||
Sbjct 1152 TTAAGAAGAAGAGCAAGAAGCAGTATGATTCTGATTCACTCTCCTTTGAAGGTTCAGGCT 1211
Query 1139 CTGACAGTTACCATCTGAGTAGGAGAAGACACACCAAGCATGTATATCCGTCTGCCTCAT 1198
|||| ||||||| ||| ||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1212 CTGATAGTTACCGTCTAAGTAGGAGAAGACACACCAAGCATGTAGATCCATCTGCCTCAT 1271
Query 1199 CAAAATCTGAGGTTTACCACCAAGGAAACAGTCACAGAGAAAAGGATTACGATGACGAGA 1258
|||||||||||||||||| |||||||||||||||||||||||| ||||| | |||||||
Sbjct 1272 TAAAATCTGAGGTTTACCATCAAGGAAACAGTCACAGAGAAAAGCATTACTACGACGAGA 1331
Query 1259 AGCACCAGAAACGGAAGGAAATCGTGGATAGACCGTCTGCTTCATCTGATGATTCAGATT 1318
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1332 AGCACCAGAAACGGAAGGAAATCGTGGATAGACCGTCTGCTTCATCCGATGATTCAGATT 1391
Query 1319 ATTATAGAAGTCACAGTAGTAGAAATAAATGTTCAGAAGATGATTACAAAAGCCATCACA 1378
||||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 1392 ATTATAGAAGTAACAGTAGTAGAAAGAAAAGATCAGAAGATGATTACAAAAGCCATCACA 1451
Query 1379 GGGAGAGAAAGCAAGTGCATAGTAACGATCCTGTTTCAGAGAAAAGTCAGAAACAGTATT 1438
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1452 GGGAGAGAAAGCAAGTGCATAGTAACGATCCTGTTTCAGAGAAAAGTCAGAAACAGCATT 1511
Query 1439 ATTCAGAGTCTGGAAAGCGTCATAGAGTCGAGAAAGAGCATAGATATGATGAGAGAAGAC 1498
|||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1512 ATTCGGAGTCTGGAAAGATTCAGAGAGTCGAGAAAGAGCATAGATATGATGAGAGAAGAC 1571
Query 1499 ACAGATACGTCGATATGGAGTCTGAAAATCGTCATGGATCCGAGAAGAAACCGAGATATG 1558
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1572 ACAGATACGTCGATATGGAGTCTGAAAATCGTAATAGATCCGAGAAGAAACCGAGATATG 1631
Query 1559 ATGATCGTGATTCTGAGAGGCATCACAGGAGTGTGAAGGGCAAAGAAAAGCATGTGTATG 1618
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1632 ATGATCGTGATTCTGAGAAGCATCACAGGAGTGTGAAGGGCAAAGAAAAGCATGTGTATG 1691
Query 1619 AAG-ATC-------C-TGAAGAGTTTTCTGACAGATACAGAAGCA-AGAAGAATACAGAA 1668
||| ||| | ||||||||||||||||||||||||||||| | ||||| || |||
Sbjct 1692 AAGCATCTGATGATCCTGAAGAGTTTTCTGACAGATACAGAAGCACA-AAGAAAACTGAA 1750
Query 1669 TCTGATTCGGAATCAAACCGTAGAAGTAGAAAGAAGAAGCAGAAGCATGAGTTATCATC- 1727
||||||||||||||||||||||||||||||||||||||||| |||||| || ||
Sbjct 1751 TCTGATTCGGAATCAAACCGTAGAAGTAGAAAGAAGAAGCA------TGAGTTGTCTTCC 1804
Query 1728 G--GAAGAAGAA------TCTCGTAAGCATCGATACAGCACTAACAGAAGAAGAAA 1775
| ||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 1805 GAAGAAGAAGAAGGGGAGTCTCGTAAGCATCGATACAGCACTAATAGAAGGAGAAA 1860
> AT3G13770.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:4519647-4521533 FORWARD LENGTH=1887
Length=1887
Score = 54.7 bits (29), Expect = 7e-06
Identities = 31/32 (97%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 2977 AATGCTCTTATTGATATGTACTCAAAATGTGG 3008
||| ||||||||||||||||||||||||||||
Sbjct 877 AATTCTCTTATTGATATGTACTCAAAATGTGG 908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 187072530447
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5