BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329621
Length=756
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19150.1 | Symbols: | Ankyrin repeat family protein | chr4:... 843 0.0
> AT4G19150.1 | Symbols: | Ankyrin repeat family protein | chr4:10471331-10472742
REVERSE LENGTH=1044
Length=1044
Score = 843 bits (456), Expect = 0.0
Identities = 536/574 (93%), Gaps = 8/574 (1%)
Strand=Plus/Plus
Query 180 ACTACACTTAGCAGCATGGGCAGGGCACAATGAGGTCGTGAGCTACTTGTGCAAGAACAA 239
|||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 224 ACTACATTTAGCAGCATGGGCAGGGCACAACGAGGTAGTGAGCTACTTATGCAAGAACAA 283
Query 240 AGCTGATGTTGGTGCTTCAGCAGGAGATGACATGGGTGCAATTCACTTTGCTTCCCAAAA 299
|||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||
Sbjct 284 AGCTGATGTTGGTGCTGCAGCAGGAGATGACATGGGTGCGATTCACTTTGCTTCTCAAAA 343
Query 300 GGGGCATTTGGAAGTTGTGAGAACTCTATTATCTGCTGGTGGTTCTGTGAAATCTATCAC 359
||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||
Sbjct 344 GGGGCATTTGGAAGTTGTGAGAACTTTATTATCTGCCGGTGGTTCTGTGAAGTCTATCAC 403
Query 360 TCGCAAGGGACTCACACCTCTTCACTATGCTGCTCAAGGTTCTCACTTTGAAATCGTCAA 419
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 404 TCGCAAGGGACTCACTCCTCTTCACTACGCTGCTCAAGGTTCTCACTTTGAAATCGTCAA 463
Query 420 GTACTTGGTTAAGAAAGGAGCGAA-TGTCAGAGCTACTACAAAGGCCGGGAAGAATCCAG 478
||||||||||||||||||||| || ||||||||||| || ||||| ||||||| |||||
Sbjct 464 GTACTTGGTTAAGAAAGGAGC-AAGCGTCAGAGCTACGACTAAGGCTGGGAAGAGTCCAG 522
Query 479 CAGATGTTGCGGGTAATGCAGAAACCCAAAACTTCCTTGAAGAATGTGAAGAGCAAGCAA 538
| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 523 CTGATGTTGCGGGTAATGCAGAAACGCAAAATTTCCTTGAAGAATGTGAAGAGCAAGCAA 582
Query 539 GGAAAGCTAAGGTGAACAATGAGAAAAAGATAGAAGA-AGTGAAACCAGCA-AGTTGTAG 596
|||||||||||||||||||||||||||||| ||| | ||||||||||| | ||||||||
Sbjct 583 GGAAAGCTAAGGTGAACAATGAGAAAAAGACGGAA-ATAGTGAAACCAG-AGAGTTGTAG 640
Query 597 CAATGCAGGAGATATCAAGGATCTGAAAAGAAAGGACTCTGAGGATGGAAACGAGGGTGA 656
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 CAATGAAGGAGATGTCAAGGATCTGAAAAGAAAGGACTCTGAGGATGGAAACGAGGGTGA 700
Query 657 GAAAGAAGAAGCTTCTGC-AATATCGAAAAAGCCAAAAGTCGCTCTTTCTCATCTTCAGG 715
| |||||||||||||| | || | |||||||||||||||| |||||||||||||||||||
Sbjct 701 GGAAGAAGAAGCTTCTTCGAA-ACCGAAAAAGCCAAAAGTTGCTCTTTCTCATCTTCAGG 759
Query 716 ACACTGATGACACAGAAGCTGATCAAGAAGAAGA 749
||| ||| ||||||||||||||||||||||||||
Sbjct 760 ACATTGACGACACAGAAGCTGATCAAGAAGAAGA 793
Score = 73.1 bits (39), Expect = 4e-12
Identities = 55/62 (89%), Gaps = 3/62 (5%)
Strand=Plus/Plus
Query 7 GGCGGAAGAGGCGGTGGAAGAGGCGGTGGAGCATCGGCTGATCTTCACTCCGCGGCAAGA 66
||||||||| || ||| |||| || |||||||||||||||||||||||||||||||||
Sbjct 84 GGCGGAAGA---GGAGGAGGAGGAGGAGGAGCATCGGCTGATCTTCACTCCGCGGCAAGA 140
Query 67 TC 68
||
Sbjct 141 TC 142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36721161457
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5