BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329623
Length=2406
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19130.1 | Symbols: | Replication factor-A protein 1-relate... 3221 0.0
AT5G45400.1 | Symbols: RPA70C, ATRPA70C | Replication factor-A ... 1218 0.0
> AT4G19130.1 | Symbols: | Replication factor-A protein 1-related
| chr4:10466477-10469092 REVERSE LENGTH=2496
Length=2496
Score = 3221 bits (1744), Expect = 0.0
Identities = 2203/2415 (91%), Gaps = 69/2415 (3%)
Strand=Plus/Plus
Query 1 ATGGAGGTAAGTTTGACGGCGGGAGCAATCGGGAAGATAATGAGTGGGGAAGTGAAAACT 60
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||
Sbjct 1 ATGGAGGTAAGTTTGACGGCGGGAGCAATCGGGAAGATAATGAATGGAGAAGTGACGACT 60
Query 61 GAGGCAGATATGATGCCGGTGCTGCAAGTGACGGAATTGAAGCAGCTTAAGGCTTATCAA 120
|| ||||||||||| |||||| ||||||||||||| ||||||||| ||| |||| | |||
Sbjct 61 GAAGCAGATATGATTCCGGTGTTGCAAGTGACGGATTTGAAGCAGATTATGGCTCAACAA 120
Query 121 GATCCAACGAGAGAGAGGTTTAGGATGGGT-TTATCAGATGGGAC-TCACTTGCATCAAG 178
|||||||| ||||||||||||||||| ||| ||||| |||||||| | ||||||||||||
Sbjct 121 GATCCAACAAGAGAGAGGTTTAGGAT-GGTGTTATCTGATGGGACAT-ACTTGCATCAAG 178
Query 179 GTATGCTCGCAACTGATCTCAACGATCTTGTCAAACAAGGGACTCTTCAATCCGGTTCCA 238
| ||||| | ||||||||||||| ||||||||||| |||||||||||||| ||||||| |
Sbjct 179 GAATGCTAGGAACTGATCTCAACAATCTTGTCAAAGAAGGGACTCTTCAACCCGGTTCTA 238
Query 239 TTGTTCGACTTACTCATTTCGGCGTTCATGTCGTCCAGACTCGAAGGATTGTTATTGTTC 298
||||| ||||||||| ||||| || | ||||| || || ||||||||||||||||||||
Sbjct 239 TTGTTAGACTTACTCGTTTCGTCGGTGATGTCATCAAGGGTCGAAGGATTGTTATTGTTC 298
Query 299 GGGAACTGGAGGTGATAAAATC-GAATTCTGATATAATCGGGCATCCTGTTCCAGGAGGA 357
| ||||||||||| ||||| | || ||||||||| ||||||||||||||||||||||||
Sbjct 299 CGCAACTGGAGGTGTTAAAA-CAGATTTCTGATATTATCGGGCATCCTGTTCCAGGAGGA 357
Query 358 AAGCATAATGATCAACGTGGAGCAGAGTCTGGTATTAAGTTAAATACAACTGGTTCTGAT 417
|||||||||||||||||||||||||| |||||||||||||| ||||||| ||||
Sbjct 358 AAGCATAATGATCAACGTGGAGCAGATTCTGGTATTAAGTTTAATACAA------CTGAG 411
Query 418 CAACAGGGTCTTGGTGTCCGTCAAGTTAACAATATCGAGACAGGGAGAAGTAATGCAGCG 477
||||| ||| |||| |||||||||| |||||||||||| |||||||||||||||||||
Sbjct 412 CAACAAGGTAGTGGTATCCGTCAAGTAAACAATATCGAGCCAGGGAGAAGTAATGCAGCT 471
Query 478 ATGTCACCTCAAGTTGTTCAAAGGCCAGTGTTTGGTACTAGTTCTAGTGTTCCTGCATCA 537
|| ||||||| || ||| | | ||||||| ||||||||||||||||||||
Sbjct 472 ATTTCACCTC-AG--GTT---------G-G--TGGTACTGGTTCTAGTGTTCCTGCATCA 516
Query 538 ACAACACCTTCCACTCGGGTAGACAGCAACCCGTCTGCAGGTCATGGAGTTTCTAGGCAG 597
||||||||||||||||||| | ||||||| |||||| ||||| ||||||| ||||||||
Sbjct 517 ACAACACCTTCCACTCGGGCATACAGCAATCCGTCTTCAGGTAATGGAGTCACTAGGCAG 576
Query 598 GACCATGCTCGTGATCCTCCAACCAGTTATCCTCGTCAGCCTCAACCACCACCACCGATG 657
||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 577 GACTATGCTCGTGATCCTCCAACAAGTTATCCTCATCAGCCTCAACCACCACCACCGATG 636
Query 658 TATGCAAACAGGGGACCAGTGG-TAAGGAACGAAGCACCTCCTAGGATAATTCCAATTAA 716
|||||||||||||||||||||| | ||||| ||||||||||||| |||||||||| ||||
Sbjct 637 TATGCAAACAGGGGACCAGTGGCT-AGGAATGAAGCACCTCCTAAGATAATTCCAGTTAA 695
Query 717 TGCTCTTAGCCCGTACTCGGGTAGGTGGACCATCAAGGCCAGAGTCACGAATAAAGCAGC 776
||||||||| || || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 696 TGCTCTTAGTCCATATTCAGGTAGGTGGACCATCAAGGCCAGAGTCACGAATAAAGCAGC 755
Query 777 ACTTAAGCAATACAGTAATCCCCGTGGGGAGGGGAAAGTGTTCAACTTTGATCTTCTTGA 836
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 756 ACTTAAGCAATACAGTAATCCCCGTGGGGAAGGGAAAGTGTTCAACTTTGATCTTCTTGA 815
Query 837 TGCTGATGGCGGAGAAATACGTGTTACTTGTTTTAACGCTGTGGCTGATCAATTCTTTGA 896
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 816 TGCTGATGGCGGAGAAATACGTGTTACTTGTTTTAACGCTGTGGCTGATCAATTCTATGA 875
Query 897 CCAGATTGTTGTTGGTAATCTTTATCTGATTTCGAGGGGAAGTTTGCGGCCTGCTCAGAA 956
||||||||||||||||||||||||||| || ||||||||||||||||||||||| || ||
Sbjct 876 CCAGATTGTTGTTGGTAATCTTTATCTTATCTCGAGGGGAAGTTTGCGGCCTGCACAAAA 935
Query 957 GAACTTTAATCATCTTCCCAATGATTACGAGATCATGCTGGATAATGCATCAACTATAAA 1016
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 936 GAACTTTAATCATCTTCGAAATGATTACGAGATCATGCTGGATAATGCATCAACTATAAA 995
Query 1017 ACAATGCTATGAGGAGGATGCTGCAATTCCGCGCCAACAGTTCCATTTCCGTACTATAGG 1076
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 996 ACAATGCTATGAAGAGGATGCTGCAATTCCGCGCCATCAGTTCCATTTCCGTACCATTGG 1055
Query 1077 TGATATTGAAAGCATGGAGAATAACAGCATCATTGATGTAATTGGTATTGTGTCATCTAT 1136
|||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1056 GGATATTGAGAGCATGGAGAATAACTGCATCGTTGATGTAATTGGTATTGTGTCATCTAT 1115
Query 1137 CAGTCCTACTGTAACAATAACGAGGAAAAACGGAACTGCAACACCGAAAAGATCACTTCA 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 CAGTCCTACTGTAACAATAACGAGGAAAAACGGAACTGCAACACCGAAAAGATCACTTCA 1175
Query 1197 GTTGAAGGATATGTCTGGCCGAAGTGTCGAGTTAACTATGTGGGGTAACTTCTGCAATGC 1256
||||||||||||||| ||||||||||| ||| |||||||||||||| |||||||||||||
Sbjct 1176 GTTGAAGGATATGTCAGGCCGAAGTGTTGAGGTAACTATGTGGGGTGACTTCTGCAATGC 1235
Query 1257 AGAAGGACAAAGGCTGCAAAATCTTTGTGATTCTGGGGAGTTTCCGGTTCTTGCTGTTAA 1316
|||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||
Sbjct 1236 AGAAGGACAAAGGCTGCAAAGTCTTTGTGATTCTGGTGTGTTTCCGGTTCTTGCTGTTAA 1295
Query 1317 GGCGGGCAGGATCAGTGAATTTAACGGAAAGACAGTGAGCACCATTGGATCAAGTCAACT 1376
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1296 GGCGGGCAGGATTAGTGAATTTAATGGAAAGACAGTGAGCACCATTGGATCAAGTCAGCT 1355
Query 1377 GTTCATTGACCCAGATTTTGTTGAAGCCCACAAACTGAAGGACTGGTTTGAGAGAGAAGG 1436
||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||
Sbjct 1356 GTTCATTGACCCAGATTTTGTTGAAGCTGAGAAACTGAAGAACTGGTTTGAGAGAGAAGG 1415
Query 1437 AAAGAGTGTCCCTTGTATCTCCTTATCTCGGGAGTTTTCCGGCAGTGGCAGAGTAGATGT 1496
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1416 AAAGAGTGTCCCTTGTATCTCCTTATCTCGGGAGTTTTCCGGCAGTGGCAAAGTAGATGT 1475
Query 1497 TCGTAAAACAATTTCTCAAATTAAAGATGAGAAACTAGGGACCTCAGAAAAACCAGACTG 1556
|||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1476 TCGTAAGACAATATCTCAAATTAAAGATGAGAAACTAGGAACCTCCGAAAAACCAGACTG 1535
Query 1557 GATTACAGTCAGTGCCACAATTATATACATGAAGGTTGAAAACTTCTGCTACACAGCTTG 1616
||| |||||||||||||||||| ||||| ||||| |||| ||||||||||||||||||||
Sbjct 1536 GATCACAGTCAGTGCCACAATTTTATACTTGAAGTTTGATAACTTCTGCTACACAGCTTG 1595
Query 1617 TCCTATCATGAATGGTGATCGTCCGTGCAGCAAAAAAGTAACGGACAATGGAGATGGCAC 1676
|||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||| ||
Sbjct 1596 TCCTATCATGAACGGTGATCGTCCATGCAGCAAAAAGGTAACAGACAATGGAGATGGGAC 1655
Query 1677 ATGGCGGTGCGAAAAGTGTGATAAAAGCGTCGATGAATGTGACTACAGGTATATACTGCA 1736
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1656 ATGGCGGTGCGAAAAGTGTGATAAAAGCGTTGATGAATGTGACTACAGGTATATACTGCA 1715
Query 1737 GCTCCAGATACAGGACCATACGGATCTTACTTGGGTCACAGCATTCCAGGAGGCTGGTGA 1796
||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1716 GCTTCAGATACAGGACCATACAGATCTTACTTGCGTCACAGCATTCCAGGAGGCTGGTGA 1775
Query 1797 AGAGATAATGGGCATATCTGCTAAAGATTTGTATTATGTGAAGTATGAACACAATGATGA 1856
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1776 AGAGATAATGGGCATATCTGCTAAAGATTTGTATTATGTGAAGAATGAACACAAGGATGA 1835
Query 1857 GGAAAAATTCGAAGATATCATCCGTAAGGTTGCTTTTACCAAGTACATCTTCAAGCTGAA 1916
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1836 GGAAAAATTCGAAGATATCATCCGTAAGGTTGCTTTTACCAAGTACAACTTCAAGCTGAA 1895
Query 1917 GGTAAAAGAAGAAACATTCAGCGACGAACAGCGTGTGAAAGCAACAGTTGTGAAAGTGGA 1976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1896 GGTAAAAGAAGAAACATTCAGCGACGAACAGCGTGTGAAAGCAACAGTTGTGAAAGTGGA 1955
Query 1977 CAAGCTAAACTATTCATCAGATACCAGGACTATTTTAGATGCCATGGATAAACTCAGGAC 2036
|||||||||||||||| |||||||||||||||| |||| ||| |||||||||||||||||
Sbjct 1956 CAAGCTAAACTATTCAGCAGATACCAGGACTATGTTAGGTGCTATGGATAAACTCAGGAC 2015
Query 2037 TGGAGATGCAAGTTCTCTTTCCATTAACATTAACGCAGAAGGATCTC-ATTACAACGCTG 2095
||||||||| ||||||| |||||||| | |||||||||| | ||||||| ||||
Sbjct 2016 CAGAGATGCAAATTCTCTTCCCATTAAC-----C-CAGAAGGATC-CGATTACAATGCTG 2068
Query 2096 ATGCAGTTAACACTGGTATAGGAAGCTCAGGAAGCTCAGGAACCAGAGATCCCTCATCAG 2155
||| ||||| |||||||||||||||||||||| | ||| | || ||||||||| |
Sbjct 2069 ATGTGGTTAATACTGGTATAGGAAGCTCAGGAA-C-CAG-A----GA--TCCCTCATCGG 2119
Query 2156 TCCAAAGAAGGGATTTCAGTTTACATGCTCATCAATCAGGTCAATCTGGGAATCACTATA 2215
||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||
Sbjct 2120 TCCAAAGAAGGGATTTCGGTTTACATGCGCATCAATCGGGTCAATCTGGGAATCACTATA 2179
Query 2216 GTAGTGGCTCTAGGCCTCAAGGTGGTGATGCTACTACTAGCTGCAATGTCTGTGGAAACA 2275
|| | | | || | |||| ||||||||||||||||||||||||||||||
Sbjct 2180 GT-G-G--T---GG--T---GGTG------CTACTACTAGCTGCAATGTCTGTGGAAACA 2221
Query 2276 GTGGTCATGTTTCTGCAAACTGTCCAAGTGCTACGA--CTG-A-GCCGCAAGGGCAGTAC 2331
||||||||||||||||||| |||||| | ||||| | | | | | |||||||||||||
Sbjct 2222 GTGGTCATGTTTCTGCAAAGTGTCCAGGCGCTACTAAGCCGCAAGA-GCAAGGGCAGTAC 2280
Query 2332 ATGGGTGGCTCTTACAGAGGCATGTCGGGGAGTTATGGAGGAGGAATACCTAGGCAACAT 2391
|||||||||||||||||||||| | |||||||||||||||||||| |||| || ||||||
Sbjct 2281 ATGGGTGGCTCTTACAGAGGCACGACGGGGAGTTATGGAGGAGGACTACCGAGACAACAT 2340
Query 2392 GTTGGAAGCTACTGA 2406
|||||||||||||||
Sbjct 2341 GTTGGAAGCTACTGA 2355
> AT5G45400.1 | Symbols: RPA70C, ATRPA70C | Replication factor-A
protein 1-related | chr5:18398990-18401644 FORWARD LENGTH=2562
Length=2562
Score = 1218 bits (659), Expect = 0.0
Identities = 1400/1746 (80%), Gaps = 97/1746 (6%)
Strand=Plus/Plus
Query 633 TCAGCCTCAACCACCACCACCGATGTATGCAAACAGGGGACCAGTGG-TAAGGAACGAAG 691
|||||| ||| || |||||||||||||| ||||||||||| |||| | ||||||||||
Sbjct 828 TCAGCCACAA-CA--ACCACCGATGTATGTTAACAGGGGACCTGTGGCT-AGGAACGAAG 883
Query 692 CACCTCCTAGGATAATTCCAATTAATGCTCTTAGCCCGTACTC-GGGTAGGTGGACCATC 750
| ||||| ||||||| ||| ||| |||||||| || ||| | |||| |||||||||||
Sbjct 884 CTCCTCCGAGGATAAATCCGATTGCTGCTCTTAATCCTTAC-CAGGGTCGGTGGACCATC 942
Query 751 AAGGCCAGAGTCACGAATAAAGCAGCA-CTTAAGCAATACAGTAATCCCCGTGGGGAGGG 809
|||| || ||||||| ||| |||| | || | || | | |||||| |||||||| ||
Sbjct 943 AAGGTTAGGGTCACGAGTAAGGCAG-ACCTGAGGCGGTTTAATAATCCGCGTGGGGAAGG 1001
Query 810 GAAAG-TGTTCAACTTTGATCTTCTTGATGCTGATGGCGGAGAAATACGTGTTACTTGTT 868
| ||| |||||| ||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 1002 G-AAGTTGTTCAGTTTTGATCTTCTTGATGCTGATGGTGGAGAAATACGGGTGACTTGTT 1060
Query 869 TTAACGCTGTGGCTGATCAATTCTTTGACCAGATTGTTGTTGGTAATCTTTATCTGATTT 928
|||| | || || |||||||||||||||| ||||||| ||||||||| ||||||||||||
Sbjct 1061 TTAATGATGCGGTTGATCAATTCTTTGACAAGATTGTAGTTGGTAATGTTTATCTGATTT 1120
Query 929 CGAGGGGAAGTTTGCGGCCTGCTCAGAAGAACTTTAATCATCTTCCCAATGATTACGAGA 988
| ||||||| |||| |||||||||||||||||||||||||||||| |||||||| || |
Sbjct 1121 CAAGGGGAAATTTGAAGCCTGCTCAGAAGAACTTTAATCATCTTCCGAATGATTATGAAA 1180
Query 989 T-CATGCTGGA-TAATGCATCAACTATAAAACAATGCTATGAGGAGGATGCTGCAATTCC 1046
| ||| |||| | ||||||||| ||| | | || | || || |||| | | |||||
Sbjct 1181 TACATT-TGGACTC-TGCATCAACGATACAGCCTTG-T--GAAGATGATGGTACCATTCC 1235
Query 1047 GCGCCAACAGTTCCATTTCCGTA-CTATAGGTGATATTGAAAGCATGGAGAATAACAGCA 1105
||| | || |||||||| |||| | |||||||||||||||| ||||||||| |||||||
Sbjct 1236 ACGCTATCATTTCCATTTTCGTAAC-ATAGGTGATATTGAAAACATGGAGAACAACAGCA 1294
Query 1106 TCATTGATGTAATTGGTATTGTGTCATCTATCAGTCCTACTGTAACAATAACGAGGAAAA 1165
|| |||||||||||||||||| || || |||||||| || ||| |||| | | ||||||
Sbjct 1295 CCACTGATGTAATTGGTATTGTTTCGTCCATCAGTCCGACAGTAGCAATTATGCGGAAAA 1354
Query 1166 ACGGAACTGCAAC-ACCGAAAAGATCACTTCAGTTGAAGGATATGTCTGGCCGAAGTGTC 1224
|| ||||| | || |||||| || |||||||||||||||||||| |||||||||||
Sbjct 1355 ACTTAACTG-AGGTACAGAAAAGGTCTCTTCAGTTGAAGGATATGTCAGGCCGAAGTGTT 1413
Query 1225 GAGTTAACTATGTGGGGTAACTTCTGCAATGCAGAAGGACA-AAGGCTGCAAAATCTTTG 1283
||| |||| ||||||||||| |||||||| ||||||||||| || |||||||||||||
Sbjct 1414 GAGGTAACCATGTGGGGTAATTTCTGCAACGCAGAAGGACAGAAAT-TGCAAAATCTTTG 1472
Query 1284 TGATTCTGGGG-AGTTTCCGGTTCTTGCTGTT-AAGGCGGGCAGGATCAGTGAATTTAAC 1341
||||||||||| | || |||||||||||| || || |||||||||||| ||||||| |||
Sbjct 1473 TGATTCTGGGGTA-TTCCCGGTTCTTGCT-TTGAAAGCGGGCAGGATCGGTGAATTCAAC 1530
Query 1342 GGAAAGACA-GTGAGCACCATTGGATCAAGTCAACTGTTCATTGACCCAGATTTTGTTGA 1400
|| ||| || |||||||| |||||| |||||||| | || || || |||||||| |||
Sbjct 1531 GGGAAG-CAAGTGAGCACAATTGGAGCAAGTCAATTCTTTATAGAGCCAGATTTCCCTGA 1589
Query 1401 AGCCCACA-AACTGAAGG-ACTGGTTTGAGAGAGAAGGAAAGAGTG-TCCCTTGTATCTC 1457
|||| | | || | |||| | |||| |||||||||||||| || || || || || |||
Sbjct 1590 AGCC-AGAGAATT-AAGGCAATGGTATGAGAGAGAAGGAAGGAATGCTCATTT-TACCTC 1646
Query 1458 CTTATCTCGGGAGTTTTCCGGCAGT-GGCAGAGTAGATGTTCGTAAAACAATTTCTCAAA 1516
| ||||| | ||||||||||| || |||||| ||| ||||| || |||| | || |
Sbjct 1647 CATATCTAGAGAGTTTTCCGGT-GTTGGCAGACAAGAAGTTCGCAAGGTAATTGCACAGA 1705
Query 1517 TTAAAGATGAGAAACTAGGGACCTCAGAAAAACCAGACTGGATTACAGTCAGTGCCACAA 1576
| || || ||||| |||||||||||||| || || |||||||| |||||| ||||||| |
Sbjct 1706 TCAAGGACGAGAAGCTAGGGACCTCAGAGAAGCCGGACTGGATCACAGTCTGTGCCACCA 1765
Query 1577 TTAT-ATACATGAAGGTTGAAAACTTCTGCTACACAGCTTGTCCTATCATGAATGGTGAT 1635
|| | || ||||||||||||||| |||||||| || |||||||||||||||||||| |||
Sbjct 1766 TT-TCATTCATGAAGGTTGAAAATTTCTGCTATACGGCTTGTCCTATCATGAATGGAGAT 1824
Query 1636 CGTCCGTGCAGCAAAAAAGTAACGGACAATGGAGATGGCACATGGCGGTGCGAAAAGTGT 1695
||||| ||||||||||| || || | || |||||||| |||||||| || || ||||||
Sbjct 1825 CGTCCATGCAGCAAAAAGGTCACAAATAACGGAGATGGGACATGGCGTTGTGAGAAGTGT 1884
Query 1696 GATAAAAGCGTCGATGAATGTGACTACAGGTATATACTGCAGCTCCAGATACAGGACCAT 1755
|| ||| |||| |||||||||||||||||||||||| | ||| ||||| |||||||||||
Sbjct 1885 GACAAATGCGTGGATGAATGTGACTACAGGTATATATTACAGATCCAGTTACAGGACCAT 1944
Query 1756 ACGGATCTTACTTGGGTCA-CAGCATTCCAGGAGGCTGGTGAAGAGATAATGGGCATATC 1814
|| || || || |||| || | |||||||| || |||||||||||||||||||| || ||
Sbjct 1945 ACAGACCTAACCTGGG-CAACTGCATTCCAAGAAGCTGGTGAAGAGATAATGGGAATGTC 2003
Query 1815 TGCTAAAGATTTGTATTATGTGAAGTATGAACA-CAATGATGAGGAAAAATTCGAAGATA 1873
||| ||||||||||||||||||||||||||| | || |||||||| ||||| |||||||
Sbjct 2004 TGCAAAAGATTTGTATTATGTGAAGTATGAAAATCAG-GATGAGGAGAAATTTGAAGATA 2062
Query 1874 TCATCCGTAAG-GTTGCTTTTACCAAGTACATCTTCAAGCTGAAGGTAAAAGAAGAAACA 1932
||||||| | | || |||||||| |||||||| |||||||||||| | |||||||||||
Sbjct 2063 TCATCCGCA-GTGTCGCTTTTACTAAGTACATTTTCAAGCTGAAGATTAAAGAAGAAAC- 2120
Query 1933 TT-CAGCGACGAACAGCGTGTGAAAGCAACAGTTGTGAAAG-TGGACAAGCTAAACTATT 1990
|| |||||| || ||||| || ||||||||||||||||||| || | ||||| || ||||
Sbjct 2121 TTACAGCGATGAGCAGCGGGTTAAAGCAACAGTTGTGAAAGCTGAA-AAGCTGAATTATT 2179
Query 1991 CATCAGATACCAGGA-CTATTTTAGATGCCATGGATAAACTCAGGACT-GGAGATGCAAG 2048
| ||| |||||||| | || |||| || || |||||||||| || | ||||||||||
Sbjct 2180 CTTCAAATACCAGGTTC-ATGCTAGAGGCAATAGATAAACTCAAGA-TAGGAGATGCAAA 2237
Query 2049 TTCTCTTTCCATTAACATTAACGCAGA-AGGATCTCA-TTACAACG-CTGATGCAGTTAA 2105
|||||| || | | | || ||||| || || || ||||| | |||||||| ||||
Sbjct 2238 TTCTCTC-CC-T-AT-A--AAGGCAGAGAGT-TC-CAATTACAG-GTCTGATGCATTTAA 2288
Query 2106 CACTGGTATAGGAAGCTCAGGAAGCTCAG-GA-ACCAGAGATCCCTC-AT-CA-GTCCAA 2160
| ||| | |||| |||||||| || || || ||| | ||| || || || | | |
Sbjct 2289 TTCCGGTGTTGGAACCTCAGGAA-CT-AGAGACACC-GC-ATCAGTCGATGCACG-C-AG 2342
Query 2161 AGAAGGGATTTCAGTTTACATGCT-CAT-C-AA-TCAGGTCAATCTGGGAATCACTATAG 2216
|||| ||| | |||| ||| || | || | ||||||| ||| ||||| || ||
Sbjct 2343 AGAA----TTTG-GATTACCTGCAGCAAACCAAGTG-GGTCAATATGGAAATCAGTACAG 2396
Query 2217 TAGTGGCT-CTAGGCCTCAAGGTGGTGATGCTACTACTAGCTGCAATGTCTGTGGAAACA 2275
||||| | | ||| ||| || ||| | | |||||||||||| || ||| | | ||
Sbjct 2397 TAGTGA-TGCAAGGTCTCTTGGCGGT--T--T--TACTAGCTGCAACGTGTGTCGCAGCA 2449
Query 2276 GTGGTCATGTTTCTGCAAACTGTCCAAGTGCT-ACGACTGAGCCGCAAGGGCAGTACATG 2334
| ||||||||||||||||| |||| || | || |||||| ||||| || ||||||
Sbjct 2450 ACAGCCATGTTTCTGCAAACTGCCCAACC-CTTATGAGTGAGCCACAAGGACAATACATG 2508
Query 2335 GGTGGC 2340
||||||
Sbjct 2509 GGTGGC 2514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119477297100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5