BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg329638

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G19003.2 | Symbols: VPS25 | E2F/DP family winged-helix DNA-b...   915    0.0  


> AT4G19003.2 | Symbols: VPS25 | E2F/DP family winged-helix DNA-binding 
domain | chr4:10407440-10408947 REVERSE LENGTH=946
Length=946

 Score =  915 bits (495),  Expect = 0.0
 Identities = 525/540 (97%), Gaps = 0/540 (0%)
 Strand=Plus/Plus

Query  1    ATGCAGAAATTGGCTGATTTCAAGCTTCCTCAATTCTTCAATTATCCTCCATACTTCACT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  276  ATGCAGAAATTGGCTGATTTCAAGCTTCCTCAATTCTTCAATTATCCTCCATACTTCACT  335

Query  61   TTGCAGCCTGTGAGGGACACGCGTGAGAAGCAAATACAGCTCTGGAAAGAACTTATTTTG  120
            |||||||||||||||||||| |||||||| || ||||||||||||||||| |||||||||
Sbjct  336  TTGCAGCCTGTGAGGGACACTCGTGAGAAACAGATACAGCTCTGGAAAGAGCTTATTTTG  395

Query  121  GATTACTGCAAATCTCAAAAGATTTTCTTGATTGGCGTTGAAGAAGATTTCCCTCTCTTC  180
            |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  396  GATTACTGCAAATCCCAAAAGATTTTCTTGATTGGTGTTGAAGAAGATTTCCCTCTCTTC  455

Query  181  TCAAACTCTGCCATTGATAGATCTCTAAGTCATGAAGCAAGGGAAACATTTCTCTCTGCC  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct  456  TCAAACTCTGCCATTGATAGATCTCTAAGTCATGAAGCAAGGGAAACATTTCTTTCAGCC  515

Query  241  ATTGTTGGAGAAGGGCGTGCAGAGTGGTTAGATAAAGGGCATAGGAAATGTCTGATTCTG  300
            |||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct  516  ATTGTTGGTGAAGGGCGTGCGGAGTGGTTAGATAAAGGGCATAGGAAATGTCTTATTCTG  575

Query  301  TGGCACCGGATTCAAGATTGGGCAGACATTATTCTTCAGTTTGTGAGAGATAATGGATTA  360
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  576  TGGCACCGGATTCAAGATTGGGCAGACATTGTTCTTCAGTTTGTGAGAGATAATGGATTA  635

Query  361  GAGGACAGTGTTATGACTGTTGAAGAAATACGTTCAGGGACAGAATCACTTGGAACAGAA  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  636  GAGGACAGTGTTATGACTGTTGAAGAAATACGTTCAGGGACAGAATCACTTGGAACAGAA  695

Query  421  CTTCAAGGGATCGATCGGACGATTCTAATGAGGGCTTTAAAGCTTCTAGAGAACAAGGGC  480
            ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct  696  CTTCAAGGGATTGATCGGACGATTCTAATGAGGGCCTTAAAGCTGCTAGAGAACAAGGGC  755

Query  481  AAGCTTGCATTGTTCAAGGGAACATCAGCAGATGATGAAGGCGTCAAGTTCTCTGTCTGA  540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  756  AAGCTTGCATTGTTCAAGGGAACATCAGCAGATGATGAAGGCGTCAAGTTCTCTGTCTGA  815



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25870585705


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5