BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329654
Length=225
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18823.1 | Symbols: | Defensin-like (DEFL) family protein |... 272 9e-73
> AT4G18823.1 | Symbols: | Defensin-like (DEFL) family protein
| chr4:10334911-10335282 REVERSE LENGTH=225
Length=225
Score = 272 bits (147), Expect = 9e-73
Identities = 208/234 (89%), Gaps = 18/234 (8%)
Strand=Plus/Plus
Query 1 ATGGTCCATTCAAGATTTGTTTTCTTTGCTTTCCTCGCTCTCTCGGTTTTACTTGC---- 56
||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1 ATGGTCCATCCAAGATTTGTTTTCTTCGCTTTCCTCGCTCTCTCCGTTTTACTTGCAGTG 60
Query 57 --G---GAAGATTCAATTTGGTCTTCCAACAAAGGAGATTCATTGTGTTGCAACGATCAC 111
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATGAATGAAGATTCAATTTTGTCTTCCAACAAAGGAGATTCATTGTGTTGCAACGATCAC 120
Query 112 CCCGAATTTGGAACATGTACTAATAATATCAATTGTAACAAGTGGTGTCTTCAAGGCTGT 171
||||||||||||| |||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 121 CCCGAATTTGGAATATGTACTAATAA-A--AGTTGTAACAAGTGGTGTCTTCAAGGCTGT 177
Query 172 AGCAGTAAGAGAGGTGGCTTCTGCAAAAGAAGAATTTGTCATTGCTACTGTTAA 225
| | | | ||| | ||||||||| ||||||| ||||||||||||||||||||||
Sbjct 178 A-C-G-A-GAG-G-TGGCTTCTGTAAAAGAAAAATTTGTCATTGCTACTGTTAA 225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10103817549
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5