BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg329668

Length=843
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G18660.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   577    7e-164


> AT4G18660.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G18690.1); 
Has 115 Blast hits to 115 proteins in 20 species: Archae - 
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:10273480-10274872 
FORWARD LENGTH=1393
Length=1393

 Score =  577 bits (312),  Expect = 7e-164
 Identities = 419/471 (89%), Gaps = 6/471 (1%)
 Strand=Plus/Plus

Query  376  GGTCTAAGCATGGCTTTGGGTGAGACACGTGGTGGAATCGGAGCAGGAGAGTCTAAGAGT  435
            ||| |||||||||| |||||||||||||||||||||||||||| ||||||||| | ||||
Sbjct  97   GGTTTAAGCATGGCGTTGGGTGAGACACGTGGTGGAATCGGAGGAGGAGAGTCGATGAGT  156

Query  436  GATCTTACGGCTGAACAGATAATCAAGATCAACGAGCTCCATCTGAAAACAATAAAGGCA  495
            |||||||||||||||||| || |||||||||||||||| ||||| |||||  |  |||||
Sbjct  157  GATCTTACGGCTGAACAGTTATTCAAGATCAACGAGCTTCATCTAAAAACGGTGGAGGCA  216

Query  496  GAGAATAAGCTGACTAAACTGTCGGCAAGCTTACAAGAAGACACGGCGGATATGCCTATC  555
            ||||| |||||||||||  | || || ||||||||||||||||||||||||| |||||||
Sbjct  217  GAGAACAAGCTGACTAAGGTATCCGCGAGCTTACAAGAAGACACGGCGGATACGCCTATC  276

Query  556  GCCGTCGCAGCGTTTTACAAAGAAGTGATCGGACAAGCTGACATGGCGGTGGAGCGTGCG  615
            ||||| |||||||||||||||||||| ||||||||||||||| ||| ||| |||||||||
Sbjct  277  GCCGTTGCAGCGTTTTACAAAGAAGTAATCGGACAAGCTGACGTGGTGGTCGAGCGTGCG  336

Query  616  CTTGATAAGCATGAAGAGGATATGGCTGGTTTATTGGTTCAAGCGGAAAAGCTGAGGTTG  675
            |||||||||||||| ||||| |||| ||||||||||||| |||| || ||||||||| ||
Sbjct  337  CTTGATAAGCATGAGGAGGACATGGGTGGTTTATTGGTTGAAGCAGATAAGCTGAGGATG  396

Query  676  ACCACATTGACTAAAATCGTTGATATATTAACGGCAGG-TCAAGCGGCGGATTTTCTTCT  734
            ||||| ||||| ||||| ||||| || |||||||| || |||||| ||||||||||||||
Sbjct  397  ACCACGTTGACCAAAATTGTTGACATTTTAACGGC-GGTTCAAGCTGCGGATTTTCTTCT  455

Query  735  CGCCGGGAAAAAACTTCATTTGGCGATGCATGAGTGGGGAAGATCAAGAGAACATCGCCG  794
             |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct  456  TGCCGGGAAAAAACTTCATTTGGCGATGCATGAGTGGGGAAAATCAAGAGAACATCGACG  515

Query  795  -CATTGAAGCTAGTGGTGGTGATACCATTGGAGAA-GTTGCCCGAGAGTAA  843
             | |||||||||||||||||||| ||  |||| || ||| || ||||||||
Sbjct  516  GC-TTGAAGCTAGTGGTGGTGATTCCGGTGGA-AATGTTACCAGAGAGTAA  564



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41091532246


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5