BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg329677

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G18590.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pr...   494    3e-139


> AT4G18590.1 | Symbols:  | Nucleic acid-binding, OB-fold-like 
protein | chr4:10236225-10237185 FORWARD LENGTH=653
Length=653

 Score =  494 bits (267),  Expect = 3e-139
 Identities = 304/322 (94%), Gaps = 2/322 (1%)
 Strand=Plus/Plus

Query  1    ATGGATACATCAAGTCCTGCTGCTTTTGTTAATGGAGCTTTGTTGAGACGGTACATTGGT  60
            ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct  88   ATGGATACATCAAGTCCTGCTGCTTTTGTGAATGGAGCTTTGTTGAGAAGGTACATTGGT  147

Query  61   CAGAAAGTGAGAGCAGTGATTCAAGTTATCAGGTCAGATATTGGATCAGTGATTGGTAAA  120
            |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct  148  CAGAAAGTGAGAGCAGTGATTCAAGTTATCAGATCAGATGTTGGATCAGTGATTGGTAAA  207

Query  121  TCGACTGATGATCAACAGATTGTTGTTAAGGGTTCACCA-AATCCGCCTTTAACTACTTA  179
            ||||||||||||||||||||||||||||| ||||| ||  || |||||||||||||||||
Sbjct  208  TCGACTGATGATCAACAGATTGTTGTTAAAGGTTCTCCTCAA-CCGCCTTTAACTACTTA  266

Query  180  CATTGAGGTAATTGGAATTGCTGAGACTGAGAACACCATTCGAGCTGAAGTTTGGACCAA  239
            | |||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct  267  CCTTGAGGTAATTGGAATTGCTGAGACTGACAACACTATTCGTGCTGAAGTTTGGACCAA  326

Query  240  CTTTGGTGATAGTTTTGATGCACAAAACTACAATGAACTATGTAAGCTCGCAAATGGTGA  299
            ||||||||||||||| ||||  |||||||||||||| ||||||||||| |||||||||||
Sbjct  327  CTTTGGTGATAGTTTCGATGTGCAAAACTACAATGAGCTATGTAAGCTTGCAAATGGTGA  386

Query  300  GTTTAGACACTTGTTCATCTAA  321
            ||||||||||||||||||||||
Sbjct  387  GTTTAGACACTTGTTCATCTAA  408



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14929521453


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5