BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329709
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18270.1 | Symbols: ATTRANS11, TRANS11 | translocase 11 | ch... 638 0.0
> AT4G18270.1 | Symbols: ATTRANS11, TRANS11 | translocase 11 |
chr4:10099208-10101897 REVERSE LENGTH=1599
Length=1599
Score = 638 bits (345), Expect = 0.0
Identities = 376/391 (96%), Gaps = 2/391 (1%)
Strand=Plus/Plus
Query 553 CTCTCTGTATTTGGAGCTTCAATGGCTGGAGCTTGTTTTGGGTTTCTGCTTCACAATCGA 612
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1054 CTCTCTGTATTTGGAGCTTCGATGGCTGGAGCTTGTTTTGGGTTTCTGCTTCACAATCGA 1113
Query 613 TACAGAGCATCAATTTCCATGGGAGATACTGGATCCTTGGCTCTAGGTGGAGCTTTGGCT 672
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1114 TACAGAGCATCAGTTTCCATGGGAGATACAGGATCCTTGGCTCTAGGTGGAGCTTTGGCT 1173
Query 673 GCAATGGCTGCTTGCTCAGGAATGTTCTTCCCATTGTTCATATCGTCTGGTGTCGCAGTT 732
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1174 GCAATGGCTGCTTGCTCAGGAATGTTCTTCCCGTTGTTCATATCGTCTGGTGTCGCAGTT 1233
Query 733 TTGGAAGCTTCTTCTGTCATTATTCAGGTCGTGTATTACTCGGCGACTAAGCGTTTAAAA 792
||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||
Sbjct 1234 TTGGAAGCTTCTTCTGTCATTATACAGGTCGTGTATTACTCGACAACTAAGCGTTTAAAA 1293
Query 793 GGAAAAGGGCGTCGGATATTCAAAAC-AGTACCATTTCATCATCACCTTAGGCTGAGTGG 851
||||||||||||||||||||||| || | |||| |||||||||||||||||||| | ||
Sbjct 1294 GGAAAAGGGCGTCGGATATTCAAGACTA-TACCGTTTCATCATCACCTTAGGCTAAACGG 1352
Query 852 TTTAAAGGAGCCAATGATAGTAACAATGGCATATGTAATATCCTCTTTGCTCTCTCTTTC 911
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1353 TTTAAAGGAGCCAATGATAGTAACGATGGCATATGTAATATCCTCTTTGCTCTCTCTTTC 1412
Query 912 AGCAGCTTACATAGGTCTTATTTCTGCATAA 942
|||||||||||||||||||||||||||||||
Sbjct 1413 AGCAGCTTACATAGGTCTTATTTCTGCATAA 1443
Score = 375 bits (203), Expect = 3e-103
Identities = 288/328 (88%), Gaps = 10/328 (3%)
Strand=Plus/Plus
Query 9 TTCCTTGTTAACTCCGAGTTCTTACCGATTCCATTACCCAAATCCGTTTCGATCTCTAGA 68
||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 9 TTCCTTGTTAACTCCGACTTCTTACCGATTTCATTACCCAAACCCGTTTCGATCTCTTGA 68
Query 69 ATCGATTCCTCCACTCTC-GGTTACACCTCCTCGCGTCGAATCTGGATCTGTTTCTTCTT 127
|||||||||||| || || || ||| | |||| |||||||||||||| |||||||
Sbjct 69 ATCGATTCCTCCCCTTTCAAATT-CACGTTATCGCATCGAATCTGGATCTCCCTCTTCTT 127
Query 128 TCAAGAGAT-A-TG-GATGTAG-TAGCGTGAGACATAGCTCTGTCTCTGTTAAGGCATTT 183
|| | || | | || | | || | || |||||||||||||||||| ||||| ||||||
Sbjct 128 TC-A-AGTTCAGTGCGCCG-AGCTTGC-AGAGACATAGCTCTGTCTCGGTTAAAGCATTT 183
Query 184 GATGATGATACATTTGATTTCTATTCCGGTGACATCTTCACTGCTACATATGCAATTTCG 243
|||||||||||||||||||||||| |||||||||| || ||||||| ||||| ||||||
Sbjct 184 GATGATGATACATTTGATTTCTATACCGGTGACATATTTGCTGCTACTTATGCTATTTCG 243
Query 244 TCGAGTGAAGGCGAAGAGAGCGATGGTGATTATGCTTTGAATGTGGTTACCGAAACTACT 303
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 244 TCGAGTGAAGGCGAAGAGAGCGATGGGGATTATGCTTTGAATGTGGTTACCGAAACTACT 303
Query 304 GCACAGAAGCTAGGAAAGTTTCCTAGAG 331
||||||||||||||||||||||| ||||
Sbjct 304 GCACAGAAGCTAGGAAAGTTTCCAAGAG 331
Score = 353 bits (191), Expect = 1e-96
Identities = 211/221 (95%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 330 AGACAGACTGAAAGTGCATGAGCCAATTAGGACACTAGGGCCAGTTCCACATAACCGCAG 389
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 525 AGACAGACTGAGAGTGCATGAGCCAATTAGGACATTAGGGCCAGTTCCACATAACCGCAG 584
Query 390 ACCAACAATCCCGACAATGGGTGGCTTGTTCTTTGTTCCAGTTGGTGTTGTTGTTGCAAT 449
|||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||
Sbjct 585 ACCAACAATCCCGACAATGGGTGGGTTGTTTTTTGTTCCAATTGGTGTTGTTGTTGCAAT 644
Query 450 AGCCTTGACTAAAGTTTCGTCCATCGAAGTCTTGGGAGCAGCAGCTGCAACTGTAGCATT 509
|||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 645 AGCCTTGAATAAAGTTTCATCCATCGAAGTCTTGGGAGCAGCAGCCGCAACTGTAGCATT 704
Query 510 TGCAGCTATTGGGCTAGTTGATGACTCCTTAAGCCTCTACA 550
|||||| ||||||||| ||||||||||||||||||||||||
Sbjct 705 TGCAGCCATTGGGCTAATTGATGACTCCTTAAGCCTCTACA 745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46064712799
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5