BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329722
Length=726
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18080.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1014 0.0
> AT4G18080.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plant-type cell wall; EXPRESSED IN: stem; BEST
Arabidopsis thaliana protein match is: Protein of unknown
function (DUF1184) (TAIR:AT3G27900.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr4:10033210-10033935
REVERSE LENGTH=726
Length=726
Score = 1014 bits (549), Expect = 0.0
Identities = 671/730 (92%), Gaps = 8/730 (1%)
Strand=Plus/Plus
Query 1 ATGGAGTGGACTGAACAAGAATCAACTGTGACTAAACGTGATTGTTTCGGGTATAGACA- 59
|||||| ||||||||||||| ||| ||||||||||||| ||||||| ||||||| | |
Sbjct 1 ATGGAGAGGACTGAACAAGATTCAGGTGTGACTAAACGTAATTGTTTGGGGTATA-ATAG 59
Query 60 ACGGTTGTATTTGATTGAGAAACTGACAAAACGACATGAGGATCTGATGAAGATGAGAAG 119
|||| |||||||||| ||||| ||||| |||||| ||||||||||||||||| ||||||
Sbjct 60 ACGGATGTATTTGATCGAGAATTTGACAGAACGACTTGAGGATCTGATGAAGAGGAGAAG 119
Query 120 AAAAGCTGTTAGATTTGGAATGGAGCTTTCGTTTCTTGTGGCGGAATTTATGTTTTTGAT 179
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GAAAGCTGTTAGATTTGGAGTGGAGCTTTCGTTTCTTGTGGCGGAATTTATGTTTTTGAT 179
Query 180 ACCTAATGAGATTCTTGCTGGTGAAACTGGAGATTACAGTATCTGTACAAAGCTATTTGG 239
||||| ||||||||||||||||||||||||||| |||||| | |||||||||||||| ||
Sbjct 180 ACCTATTGAGATTCTTGCTGGTGAAACTGGAGAGTACAGTCTGTGTACAAAGCTATTAGG 239
Query 240 GGTTAATGAAGATGATAAGGGTACAAGTGTAATCATAGGAAAGCTCGAGGCAGTCTTTGA 299
||| |||||||| |||| ||||||||||||| |||||||||||||||||| ||||||||
Sbjct 240 GGTCAATGAAGACGATACGGGTACAAGTGTAGTCATAGGAAAGCTCGAGGAAGTCTTTGG 299
Query 300 AATAGTGATTTGGAAGAAGGTA-AGCAAGGAACATGATGTGGACCTTCCTGAATCTATTT 358
| ||||||| |||||||||| | | |||||||||| ||||||||||||||||||||||||
Sbjct 300 AGTAGTGATCTGGAAGAAGG-AGAACAAGGAACATAATGTGGACCTTCCTGAATCTATTT 358
Query 359 TTCGGTATGATGATTTCATTCGTCTTTGCGCAGATGCAACTCA-AGCCTTGGGAAAGATT 417
|||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||
Sbjct 359 TTCGGTATGATGATTTCATTCGTCTTTGTGCAGATGCAACT-AGAGCCTTGGGAAAGATT 417
Query 418 GTTTGGGATCT-GAAAGGGAAACACTGTGAAAGACTCAAGCTTTCTGATTTGGATTTTCT 476
|||| || ||| |||| || ||| |||||||||||||||||||||||||| |||| |||
Sbjct 418 GTTTTGGCTCTGGAAA-AGAGACAGTGTGAAAGACTCAAGCTTTCTGATTTAGATTCTCT 476
Query 477 GTTTGAAGATTGCCAAAAAGTGTTGATGAAGATAGAACTGAAGCTAGCAGAGATGAAGCA 536
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 477 GTTTGAAGATTGCCAAAAAGTGTTGATGAAGATAGAGCTGAAGCTAGCAGAGATGAAGCA 536
Query 537 ATGGGTTTACAGATCGGTTTCTGCGGATTATGAGTCGTTTTCGAAGTCAGAAAGGTCTGA 596
| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 537 ACAGGTTTACAGATCGGTTTCCACGGATTATGAGTCGTTTTCGAAGTCAGAAAGGTTTGA 596
Query 597 TAGTTTTCTCAGAATAAAGCTCATGAAGAGGGTCATAGCTGATAACAGATATGGGAGATC 656
|||||| || ||||||||||||||||| |||||||| ||||||||||||| |||||||||
Sbjct 597 TAGTTTGCTAAGAATAAAGCTCATGAATAGGGTCATTGCTGATAACAGATTTGGGAGATC 656
Query 657 AGTGATTGGATCTTACTTAGTAGAGATATGGCAGTCTCTGTTTCAAGCAGAGGCATTACA 716
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 657 AGTGATTGGATCTTACTTACTAGAGATATGGCAGTCTCTGTTTCAAGCAGAGGCATTACA 716
Query 717 GGAGCTGTGA 726
||||||||||
Sbjct 717 GGAGCTGTGA 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35214137047
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5