BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329738
Length=3249
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17895.1 | Symbols: UBP20 | ubiquitin-specific protease 20 |... 2593 0.0
AT4G17890.1 | Symbols: AGD8 | ARF-GAP domain 8 | chr4:9937022-9... 1982 0.0
AT5G46750.1 | Symbols: AGD9 | ARF-GAP domain 9 | chr5:18969749-... 852 0.0
AT4G17914.1 | Symbols: | pseudogene of ubiquitin-specific prot... 220 5e-56
> AT4G17895.1 | Symbols: UBP20 | ubiquitin-specific protease 20
| chr4:9939695-9942772 FORWARD LENGTH=2381
Length=2381
Score = 2593 bits (1404), Expect = 0.0
Identities = 1812/2000 (91%), Gaps = 63/2000 (3%)
Strand=Plus/Plus
Query 1280 AGTCATTGGCTCTTTCGTCCCCAAATCGAGAT--C-GCG--G-CGATG---ATAATAATA 1330
|||||||||||||||||||||||||||||||| | ||| | |||| |||||||||
Sbjct 341 AGTCATTGGCTCTTTCGTCCCCAAATCGAGATCGCAGCGATGATGATGATAATAATAATA 400
Query 1331 ATCATGATTCGCTCTCAATTCCGCCTCCGATCTATGATGGTTACACCTCTTCTTCGTCTG 1390
||||||||||| | |||||||||||||||||||||||||| || | ||||||||| ||||
Sbjct 401 ATCATGATTCGGTTTCAATTCCGCCTCCGATCTATGATGGGTATAGCTCTTCTTCCTCTG 460
Query 1391 ACGAAACCCAATCCGTT-CAT-T-CTCCGATCAATTTGGATCACGATGAGTTCAGCAATT 1447
||||| |||| |||||| | | | ||||||||||||||||||||||||| | | |
Sbjct 461 ACGAATCCCAGTCCGTTCCTTCTCCTCCGATCAATTTGGATCACGATGA--T--G--A-- 512
Query 1448 TTCCAGACTCTCAGACTCGAATTGGGACTACTTCTCAAGCTCTAGACGATATCGACGATG 1507
| || | ||||| || ||| ||| |||||| |||||||||||||||||||||||||
Sbjct 513 -T---GAGTGTCAGATTCCAATCAGGAATACTTCGCAAGCTCTAGACGATATCGACGATG 568
Query 1508 ATCTCTGGGACGCGTGTCCGTCTGATGATCTCCGAGAGGCTCACAGACCTTGGACTCCCA 1567
|| ||| | | | | || ||||||||||| |||| ||| ||||||||||||||| |
Sbjct 569 ATATCT--G--G-G-G--CG-ATGATGATCTCCCAGAGACTCGCAGACCTTGGACTCCTA 619
Query 1568 ATGTTTCGCCTGGTTTTGGAAGCGATGATGATGATGACAACT-CT-A--A-AAC-C---G 1618
|||||||||||||||||||||||||||||||||||||||| | | | | ||| |
Sbjct 620 ATGTTTCGCCTGGTTTTGGAAGCGATGATGATGATGACAA-TGATGATGACAACTCTAAA 678
Query 1619 AAT-CTCCTCGCAAATCCTTG-T-T-TGGATTCCCGCAAGAACCTGAGCCCGTGACTGGT 1674
||| ||||||||||||||| | | ||| |||| ||||||||||||||| || ||||||
Sbjct 679 AATGAACCTCGCAAATCCTTGTTCTATGGTTTCCGGCAAGAACCTGAGCCTGTTACTGGT 738
Query 1675 GTTGGTGCTGGGCTTTGGAATCTAGGCAACACTTGTTTCCTTAATTCGGTGTTTCAATGC 1734
|| || ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 739 GTGGGAGCTGGGCTTTGGAATTTAGGCAACAGTTGTTTCCTTAATTCGGTGTTTCAATGC 798
Query 1735 TTCACTCATACTGTGTCACTTATCGAGAGCCTTCGTGCTTACAAATATGAAGTTCCCTGT 1794
||||||||||||||| |||||||||||||||||| | ||| || |||||||||||| |||
Sbjct 799 TTCACTCATACTGTGCCACTTATCGAGAGCCTTCTTTCTTTCAGATATGAAGTTCCATGT 858
Query 1795 CACTGTGGCAATGAGTTCTTCTGTGTTATAAGGGCTCTTCGATATCACATTGAGGCTGCA 1854
|||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 859 CACTGTGGGAATGAGTTCTTCTGTGTTATAAGGGCTATTCGCTATCACATTGAGGCTGCA 918
Query 1855 TTGAGGCCTGAGAGATGTCCAATTGCTCCCTATTATTTTCTTAACAATCTTAATTATTTT 1914
||||||||||||||||||||||||||||| |||| |||| || |||||||||| ||||||
Sbjct 919 TTGAGGCCTGAGAGATGTCCAATTGCTCCGTATTTTTTTTTTGACAATCTTAACTATTTT 978
Query 1915 TCGCCTGACTTCCAGCGTTATCAACAAGAAGACGCTCATGAGTTTCTGCAAGCATTTTTG 1974
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 TCACCTGACTTCCAGCGTTATCAACAAGAAGACGCTCATGAGTTTCTGCAAGCATTTTTG 1038
Query 1975 GAGAAGTTGGAGAGATGTGGTTCGGATAGAAGAAGTTTTCATGGCAATATCTCTTCTCAG 2034
||||||||||||| ||||||||||||| ||| |||||||| |||| ||||| |||||||
Sbjct 1039 GAGAAGTTGGAGATATGTGGTTCGGATCGAACAAGTTTTCGTGGCGATATCACTTCTCAA 1098
Query 2035 GATGTCTTTGCTGGTCGTCTCATCAGTGGACTCCGTTGCTGCAACTGCAACT-CTGTCTC 2093
||||||||| ||||||||||||||||||| || |||||||||||||| ||| | |||||
Sbjct 1099 GATGTCTTTTCTGGTCGTCTCATCAGTGGGCTACGTTGCTGCAACTGTGACTAC-GTCTC 1157
Query 2094 CGAGACATTTGAAAAGTCTGTTGGGTTGAGTTTGGAAATTGAAGATGCGGATACCCTTGG 2153
|||||||| ||||||||| ||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1158 CGAGACATATGAAAAGTCAGTTGGGTTGAGTTTGGAAATTGAGGATGTGGATACCCTTGG 1217
Query 2154 GAGTGCACTTGAATCCTTTACCCGTGTGGAGAAACTTGATGAGCAGTTGACATGTGATA- 2212
|||||||| ||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct 1218 AAGTGCACTAGAATCCTTTACCCGTGTGGAGAAACTTGATGAGCAATTGACATGCGACAA 1277
Query 2213 CTTGTAATGAAAAAGTTTCAAAGGAGAAGCAAATGCTGCTTGATAAGCTCCCTTTGGTTG 2272
|| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1278 CT-GTAATGAAAAAGTTTCAAAGGAGAAGCAACTGTTGCTTGATAAGCTCCCTTTGGTTG 1336
Query 2273 CTACTTTCCATCTGAAGAGATTCAAGAATAATGGATTTTATATGGAGAAGATCTTTAAGC 2332
| ||||||||| |||||||||||||||||||||| || |||||||||||||||| |||||
Sbjct 1337 CCACTTTCCATTTGAAGAGATTCAAGAATAATGGGTTATATATGGAGAAGATCTATAAGC 1396
Query 2333 ATGTCAAGGTTCCATTAGAGATAGACTTGCAGCCATATATGAGGAATAGCCAGGAAAACG 2392
|||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1397 ATGTCAAGATCCCATTAGAGATAGACTTGCAGCCATATATGAGGAATATCCAGGAAAACG 1456
Query 2393 AAGTTTCTACAAAATACCATCTCTATGCTCTTGTGGAACATCTTGGGTATTCAGTAGCTT 2452
|||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||
Sbjct 1457 AAGTTTCTACAAAATACCATCTTTATGCTCTGGTGGAACATTTTGGGTATTCAGTAGCTT 1516
Query 2453 ATGGACATTACTCCTCCTATGTGAGATCCGCTCCTAAGATATGGCATCACTTTGATGACT 2512
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1517 ATGGACATTACTCCTCCTATGTGAGATCAGCTCCTAAGATATGGCATCACTTTGATGATT 1576
Query 2513 CGAAGGTCATTAGAATTGATGAAGATAGGGTGCTATCACAGGATTCATATATTCTTTTTT 2572
||||||||| |||||| |||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1577 CGAAGGTCACTAGAATAGATGAAGATATGGTGCTATCACAGGATTCGTATATTCTTTTTT 1636
Query 2573 ATGCACGGGAAGGAACTCCCTGGTTTTCTAGTGCCTATGAAGAGTTGCAGCCATTGCTTG 2632
||||||| |||||||||| |||||||||||||| |||||||||| ||||||||||| |||
Sbjct 1637 ATGCACGAGAAGGAACTCGCTGGTTTTCTAGTGTCTATGAAGAGATGCAGCCATTGGTTG 1696
Query 2633 AAGCGAGTTTACTAAATTCTTCCCCAAAGTCTGTGCTTGATTCTTCTACTAACGGGGAGT 2692
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1697 AAGCGAGTTTACTAAATTCGTCCCCAAAGTCTGTGCTTGATTCCTCTACTAACGGGGAGT 1756
Query 2693 GTTTATCAGAGATCAGTTATGAGAATGGCGATAAATCAAGCAAACCCTGCGATTCTGCTG 2752
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1757 GTTTATCAGAGATCAGTTATGAGAATGGCGATAAAGCAAGCAAACCCTGCGATTCTGCTG 1816
Query 2753 GAGTGTCTAACAAACATGTCAAGACAAAAGAAGATTTTGTTTCCCTCTCTAATGAGCTAA 2812
|||||| |||| ||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1817 GAGTGTGTAACCAACATGTCAAGACGAAAGAAGATTTTGTTTCCCTCTCTAATGA--T-- 1872
Query 2813 CCGAAGATGTGTTTCTATCAGCAGAGTCTTCTAGTGGCGAGGATTCTACTATGGGAGAGC 2872
|| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1873 --GA---TGTGTTTCTATCAGCAGAGTCTTCTAGTGGCGAGGAGTCTCCTATGGGAGAGC 1927
Query 2873 TTTTGGACCCGCTTGAGACTGTTGATTCTTACAGTCCATGCACTGAGAATGAACCAGATT 2932
|||||||||||||||| ||| ||||||||||||||||||||||||||| ||| ||||||
Sbjct 1928 TTTTGGACCCGCTTGATCCTGATGATTCTTACAGTCCATGCACTGAGAAAGAATCAGATT 1987
Query 2933 CTTGTTTAGCCATTGAAAGAGCTACCACTGGTGATGAtttttttCCTCTGCTCCTGGATC 2992
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1988 CTTGTTTAGCCATTGAAAGAGCTACCATTCGTGATGATTTTTTTCCTCTGCTCCTGGATC 2047
Query 2993 AAAATCAAGAGTTGTCG---TCGTCTCCAAAACAGCAAGAAGGAACTTTTCAAATGCAGC 3049
|||||||||||| |||| ||||||||||||| ||||||| |||||||| |||||||||
Sbjct 2048 AAAATCAAGAGTCGTCGACGTCGTCTCCAAAACTGCAAGAAAGAACTTTTGAAATGCAGC 2107
Query 3050 TCTCGCAAATCGAAGAAACCACAAAGAGCCAAGAACCTTGGAAGCAGCCATTATCATCAA 3109
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2108 TCTTGCAAATGGAAGAAACCACAAAGAGCCAAGAACCTTGGAAGCAGCCATTATCATCAA 2167
Query 3110 TAAGCAACATTGCAGATTCCATGGAAGCAGAATTTGTGAATGGAGACCTCATGAAGAAAC 3169
||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2168 TAAGCAATATCGCAGATTCCATGGAAGCAGAATTTGTGTATGGAGACCTCATGAAGAAAC 2227
Query 3170 CTTCACCTAGGGCTAGAGAGTTGTTGGATCAAGCCATTTCTACAACTGGTTCTCCACCTA 3229
|||||||| | |||||||||||||||||||||||||||||||||| ||||||||| || |
Sbjct 2228 CTTCACCTCGTGCTAGAGAGTTGTTGGATCAAGCCATTTCTACAAATGGTTCTCCTCCCA 2287
Query 3230 AAAAGTTAAAAACAACATGA 3249
||||||||||||||||||||
Sbjct 2288 AAAAGTTAAAAACAACATGA 2307
> AT4G17890.1 | Symbols: AGD8 | ARF-GAP domain 8 | chr4:9937022-9939493
FORWARD LENGTH=1688
Length=1688
Score = 1982 bits (1073), Expect = 0.0
Identities = 1187/1242 (96%), Gaps = 8/1242 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCTTCTGCTGAC-AACAATCTTACCGACAAAAACATTGTTTTCAGAAAACTCAA 59
|||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 100 ATGGCTTCTTCTTCTG-CTGACAATCTTACCGACAAAAACATTGTTTTCAGAAAACTCAA 158
Query 60 ATCAAAATCTGAGAACAAGGTCTGCTTCGATTGTAGTGCGAAGAATCCAACATGGGCATC 119
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 159 ATCAAAATCTGAGAACAAGGTCTGCTTCGATTGTAGTGCGAAGAATCCAACTTGGGCATC 218
Query 120 GGTTACTTATGGGATTTTTCTCTGCATCGATTGTTCAGCTACTCATCGGAATCTCGGTGT 179
|||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 219 GGTTACATATGGGATTTTCCTCTGCATCGATTGTTCAGCTACTCACCGGAATCTTGGTGT 278
Query 180 TCATATCAGCTTCGTCAGATCAACGAATTTAGACTCGTGGAGCCCTGAGCAGCTTAGGAC 239
|||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 279 TCATATCAGCTTCGTCAGATCAACGAATTTAGACTCTTGGAGCCCGGAGCAGCTCAGGAC 338
Query 240 AATGATGTTTGGTGGCAACAACCGCGCTCAGGTGTTT-TTCAAGCAACATGGATGGACTG 298
||||||||||||||| |||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 339 AATGATGTTTGGTGGTAACAACCGTGCTCAGGT-TTTCTTCAAGCAACATGGATGGACTG 397
Query 299 ATGGTGGCAAAATTGAAGCCAAGTATACTTCAAGAGCTGCTGATTTGTATAGGCAGATTC 358
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 398 ATGGTGGCAAAATTGAAGCTAAGTATACTTCAAGAGCTGCTGATTTGTATCGGCAGATTC 457
Query 359 TTGCTAAGGAAGTTGCTAAAGCGATTGCAGAAGATACGAATTCTGGT-TTACTGTCATCT 417
||||||| |||||||| ||||||||||| ||||| || ||||||||| || |||||||||
Sbjct 458 TTGCTAAAGAAGTTGCGAAAGCGATTGCGGAAGAAACTAATTCTGGTCTT-CTGTCATCT 516
Query 418 CCAGTTGCTACTTCTCAGTTACCGGAAGTATCTAATGGGGGTTCTTCTTATTCTGTCAAG 477
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 517 CCCGTTGCTACTTCTCAGTTACCGGAAGTATCTAATGGGGTTTCTTCTTATTCTGTCAAG 576
Query 478 GAAGAGTTACCTCCTCCTAAATATGAAGGTGCTACTGCCACTTCTTCGCCTAGAGCTTCT 537
||||||||||||| | | ||| |||||| | | | ||| ||||||||||||| |||||||
Sbjct 577 GAAGAGTTACCTCTTTCGAAACATGAAGCTACCAGTGCTACTTCTTCGCCTAAAGCTTCT 636
Query 538 AATACAGTTGTGCCTAGTACGTTTAAGAAACCTATCGGTGCTAAAAGGACAGGCAAAACT 597
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 637 AATACAGTTGTGCCTAGTACGTTTAAGAAACCTATTGGTGCTAAAAGGACAGGAAAAACT 696
Query 598 GGTGGTCTTGGTGCGAGGAAGCTTACTACCAAGCCAAAGGACAATCTCTATGAGCAAAAA 657
|||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 697 GGTGGTCTTGGTGCAAGGAAGCTTACTACTAAGCCAAAAGACAATCTCTATGAGCAGAAA 756
Query 658 CCGGAAGAAGTTGCACCGGTTATTCCGGCTGCATCATCAACAAATAATGGAGAAAGCAAA 717
|||||||||||||||||||||||||| |||| ||||||||||||||| || |||||||||
Sbjct 757 CCGGAAGAAGTTGCACCGGTTATTCCCGCTGTATCATCAACAAATAACGGGGAAAGCAAA 816
Query 718 TCATCAGCTGGTTCATCGTTTGCCTCTCGGTTTGAGTACAATGACGACTTGCAATCTGGA 777
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 817 TCATCAGCTGGTTCATCATTTGCCTCTCGGTTTGAGTACAATGACGACCTGCAATCTGGA 876
Query 778 GGACAAAGCGTTGGTGGTACACAAGTGCTTAACCATGTTGCTCCACCAAAGTCGTCAAGC 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 GGACAAAGCGTTGGTGGTACACAAGTGCTTAACCATGTTGCTCCACCAAAGTCGTCAAGC 936
Query 838 TTCTTTTCGGATTTTGGAATGGACAGTTCTTTTCCCAAGAAATCAAGCTCCAACTCGTCA 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 937 TTCTTTTCGGATTTTGGAATGGACAGTTCTTTTCCCAAGAAATCAAGCTCCAACTCTTCA 996
Query 898 AAATCTCAAGTTGAAGAATCAGATGAAGCAAGAAAGAAGTTCACAAACGCAAAGTCCATA 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 AAATCTCAAGTTGAAGAATCAGATGAAGCAAGAAAGAAGTTCACAAACGCAAAGTCCATA 1056
Query 958 TCTTCAGCTCAGTACTTTGGGGATCAGAACAAAAACGCTGATATGGAATCAAAAGCTACT 1017
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1057 TCTTCAGCTCAGTACTTTGGGGATCAGAACAAAAACGCTGATCTGGAATCAAAAGCTACT 1116
Query 1018 CTTCAGAAGTTTGCAGGCTCAGCATCTATCTCAAGCGCTGATTTTTACGGTCACGACCAA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 CTTCAGAAGTTTGCAGGCTCAGCATCTATCTCAAGCGCTGATTTTTACGGTCACGACCAA 1176
Query 1078 GATGATTCCAATATTGATATAACAGCTAGTGATCTCATTAACCGACTTTCTTTCCAGGCG 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 GATGATTCCAATATTGATATAACAGCTAGTGATCTCATTAACCGACTTTCTTTCCAGGCG 1236
Query 1138 CAACAAGATATATCGTC-CTTGGTGAACATAGCAGGGGAAACAAAGAAGAAGCTTGGAAC 1196
||||||||| ||||||| || ||||||||||||||| |||||||||||||||||||||||
Sbjct 1237 CAACAAGATCTATCGTCGCT-GGTGAACATAGCAGGAGAAACAAAGAAGAAGCTTGGAAC 1295
Query 1197 TTTGGCTTCTGGTATCTTCAGTGATATTCAAGACAGAATGCT 1238
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 TTTGGCTTCTGGTATCTTCAGTGATATTCAAGACAGAATGCT 1337
> AT5G46750.1 | Symbols: AGD9 | ARF-GAP domain 9 | chr5:18969749-18971932
REVERSE LENGTH=1525
Length=1525
Score = 852 bits (461), Expect = 0.0
Identities = 992/1240 (80%), Gaps = 70/1240 (6%)
Strand=Plus/Plus
Query 22 AATCTTACCGACAAAAACATTGTTTTCAGAAAACTCAAATCAAAATCTGAGAACAAGGTC 81
||||| ||||| || || ||||||||||||| || ||||||||||| |||||||||||
Sbjct 128 AATCTCACCGATAAGAATGTTGTTTTCAGAAAGCTGAAATCAAAATCCGAGAACAAGGTT 187
Query 82 TGCTTCGATTGTAGTGCGAAGAATCCAACATGGGCATCGGTTACTTATGGGATTTTTCTC 141
||||| ||||||||||||||||||||||||||||| || ||| |||||||||| || ||
Sbjct 188 TGCTTTGATTGTAGTGCGAAGAATCCAACATGGGCTTCTGTTCCTTATGGGATCTTCCTA 247
Query 142 TGCATCGATTGTTCAGCTACTCATCGGAA-TCTCGGTGTTCATATCAGCTTCGTCAGATC 200
|||||||||||||| ||| |||||| || ||| ||||||||||||||||||||||| ||
Sbjct 248 TGCATCGATTGTTCTGCTGTTCATCG-AAGTCTAGGTGTTCATATCAGCTTCGTCAGGTC 306
Query 201 AACGAATTTAGACTCGTGGAGCCCTGAGCAGCTTAGGACAATGATGTTTGGTGGCAACAA 260
|||||| |||||||||||||| ||||||||||| || |||||||||||||| || |||||
Sbjct 307 AACGAACTTAGACTCGTGGAGTCCTGAGCAGCTAAGAACAATGATGTTTGGAGGGAACAA 366
Query 261 CCGCGCTCAGGTGTTTTTCAAGCAACATGGATGGACTGATGGTGGCAAAATTGAAGCCAA 320
|| |||||||||||||| |||||||||||||||| ||||||||| || ||||| || ||
Sbjct 367 TCGAGCTCAGGTGTTTTTTAAGCAACATGGATGGAATGATGGTGGTAAGATTGAGGCTAA 426
Query 321 GTATACTTCAAGAGCTGCTGATTTGTATAGGCAGATTCTTGCTAAGGAAGTTGCTAAAGC 380
|||||||||||||||||||||| ||||||| |||| ||||||||| ||||||||||||||
Sbjct 427 GTATACTTCAAGAGCTGCTGATATGTATAGACAGACTCTTGCTAAAGAAGTTGCTAAAGC 486
Query 381 GATTGCAGAAGATACGAATTCTGGTTTACTGTC---ATC-TCCAGTTGCTACTTCTCAGT 436
|| || ||||| | | ||| ||||| ||| ||| || |||||||||||||||
Sbjct 487 CATGGCTGAAGA-A--A---CTGTTTTACCGTCGTTATCCTCT-GTTGCTACTTCTCAGC 539
Query 437 TACCGGAAGT-ATCT-AATGGGGGTT--CTTCTTATTCTGTC-AAGGAAGAGTTACCTCC 491
| |||| | |||| || ||||| ||||| | ||| | || || ||||| | |
Sbjct 540 CAGTGGAA-TCATCTGAAAATGGGTTTACTTCTGAATCTC-CGAAAGA-GAGTT-C-T-- 592
Query 492 TCCTAAAT-ATGAAGGTGCTACTGCCACTTCTTCGCCTAGAGCTTCTAATACAGTTGT-G 549
| | || | |||| ||| || | | |||| || | ||||||| | | |||||| |
Sbjct 593 T--TGAAGCAAGAAGCAGCTGTTGTC--T-CTTCACCAAAAGCTTCTCAGAAAGTTGTTG 647
Query 550 CCTAGTACGTTTAAGAAACCTATCGGT--GCTAAAAGGACAGGCAAAACTGGTGGTCTTG 607
| ||||||||||||||||||| | | | || ||| | | || || |||||||||||||
Sbjct 648 C-TAGTACGTTTAAGAAACCTCTTGTTTCGCGAAA-GT-CTGGGAAGACTGGTGGTCTTG 704
Query 608 GTGCGAGGAAGCTTACTACCAAGCCAAAGGACAATCTCTATGAGCAAAAACCGGAAGAAG 667
|||| | ||||||||||| ||| ||||||| || ||||||||||| || || ||||||
Sbjct 705 GTGCTCGTAAGCTTACTACTAAGTCAAAGGATAACCTCTATGAGCAGAAGCCTGAAGAAC 764
Query 668 TTGCACCGGTTATTCCGGCTGCATCATCAACAAATAATGGAGAAAGCAAATCATCAGCTG 727
|| ||| || ||||| ||||| || || ||| |||| | | || ||| ||||||
Sbjct 765 CTGTACCTGTGATTCCTGCTGCTTC-TC--CAACCAATG-ACA---CA--TCAGCAGCTG 815
Query 728 GTTCATCGTTTGCCTCTCGGTTTGAGTACAATGACGACTT-GCAATCTGGAGGACAAAGC 786
| ||||| ||||||||||| ||||||||| ||| || | ||||||||| || |||||
Sbjct 816 GATCATCATTTGCCTCTCGATTTGAGTACTTTGATGA-TGAGCAATCTGGTGGGCAAAG- 873
Query 787 GTTGGTGGTACACAAGTGCTTAACCATGTTGCTCCACCAAAGTCGTCAAGCTTCTTTTCG 846
| || |||| ||||||| ||||||||||||||||||||| |||| ||||||
Sbjct 874 -T-GGC---ACACGGGTGCTTAGCCATGTTGCTCCACCAAAGTCATCAAATTTCTTTAAT 928
Query 847 GATTTTGGAATGGACAGTTCTTTTCCCAAGAAATCAAGCTCCAA-CTCGTCAAAATCTCA 905
|| ||||||||||||||| |||| |||||||| |||||||| || ||| || ||| ||||
Sbjct 929 GAATTTGGAATGGACAGTGCTTTCCCCAAGAAGTCAAGCTC-AAGCTCATCCAAAGCTCA 987
Query 906 AGTTGAAGAATCAGATGAAGCAAGAAAGAAGTTCACAAACGC-AAAGTCCATATCTTCAG 964
||||||||| |||||||||||||||||||||| ||||||| ||| || || || || |
Sbjct 988 GGTTGAAGAAACAGATGAAGCAAGAAAGAAGTTTTCAAACGCCAAA-TCGATTTCCTCTG 1046
Query 965 CTCAGTACTTTGGGGA-TCAGAACAAAAACGCTGATATGGAATCAAAAGCTACTCTTCAG 1023
| || | ||| || | |||||||| | | || ||| | || ||||||||||| ||||||
Sbjct 1047 CCCAATT-TTTCGGAAATCAGAACAGAGATGCCGATCTTGACTCAAAAGCTACCCTTCAG 1105
Query 1024 AAGTT-TGCAGGCTCAGCATCTATCTCAAGCGCTGAT-TTTTACGGTCACG-ACCAAGAT 1080
||||| | | || |||||| |||| ||||| ||||| |||| || |||| |||| |||
Sbjct 1106 AAGTTCT-CGGGTTCAGCAGCTATTTCAAGTTCTGATCTTTTT-GGCCACGGACCA-GAT 1162
Query 1081 GATTCCAATATTGATATAACAGCTAGTGATCTCATTAACCGACTTTCTTTCCAGGCGCAA 1140
|||||||| || ||||| || || || |||||||| |||||| ||||||||||||||||
Sbjct 1163 GATTCCAACATCGATATCACTGCAAGCGATCTCATCAACCGAATTTCTTTCCAGGCGCAG 1222
Query 1141 CAAGATATATCGTCC-TTGGTGAACATAGCAGGGGAAACAAAGAAGAAGCTTGGAAC-TT 1198
|||||||| || || ||| | ||| |||| | |||||||||||| ||||| ||||| ||
Sbjct 1223 CAAGATATGTCATCTATTGCT-AACTTAGCTGAGGAAACAAAGAATAAGCTGGGAACATT 1281
Query 1199 TGGCTTCTGGTATCTTCAGTGATATTCAAGACAGAATGCT 1238
|| || || |||| ||||||||| |||| || ||||||||
Sbjct 1282 TGCCT-CTAGTATATTCAGTGATCTTCAGGATAGAATGCT 1320
> AT4G17914.1 | Symbols: | pseudogene of ubiquitin-specific protease
| chr4:9958159-9958733 FORWARD LENGTH=575
Length=575
Score = 220 bits (119), Expect = 5e-56
Identities = 143/155 (92%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 241 ATGATGTTTGGTGGCAACAACCGCGCTCAGGTGTTTTTCAAGCAACATGGATGGACTGAT 300
|||||||||||||||||| |||| ||||||||||| |||||||||||||||||||| |||
Sbjct 1 ATGATGTTTGGTGGCAACTACCGTGCTCAGGTGTTCTTCAAGCAACATGGATGGACCGAT 60
Query 301 GGTGGCAAAATTGAAGCCAAGTATACTTCAAGAGCTGCTGATTTGTATAGGCAGATTCTT 360
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 GGTGGCAAAATCGAAGCTAAGTATACTTCGAGAGCTGCTGATTTGTATAGGCAGATTCTT 120
Query 361 GCTAAGGAAGTTGCTAAAGCGATTGCAGAAGATAC 395
||||||||||||||| |||| | |||| ||||||
Sbjct 121 GCTAAGGAAGTTGCTGAAGCCAATGCACTAGATAC 155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 161637890346
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5