BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329741
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17860.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1530 0.0
> AT4G17860.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr4:9924698-9926372 REVERSE LENGTH=1106
Length=1106
Score = 1530 bits (828), Expect = 0.0
Identities = 997/1078 (92%), Gaps = 14/1078 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCGTACTGGTTATTATATC-TCTTCATCTATCTTTTTTCTTGTCATATTGCTCA 59
|||||||||||||| |||||||| | ||||||| ||||||| ||||| ||| ||||||||
Sbjct 36 ATGGCTTCGTACTGTTTATTATA-CATCTTCATATATCTTTGTTCTTATCACATTGCTCA 94
Query 60 AACAGTTCAGGAAGAAATAGAATACGAATGTGTAGATATCTATAAGCAACCTGCATTTCA 119
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 95 AACAGTTCAGAAAGAAATAGAATACGAATGTGTGGATATCTATAAGCAACCTGCATTTCA 154
Query 120 ACATCCATTGATGAAGGATCACCAAATCCAGATGAGACCAAGTGTCGAGTTTCAAGCCAT 179
||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||
Sbjct 155 ACATCCATTGATGAAAGATCACCAAATCCAGATGAGACCAAGTGTCGATTTTCAAACCAC 214
Query 180 GCTATCGATGGATTCAGAAACATCAGATTTGTTCACCGGTGAATCTGAAGAAAGGTGTCC 239
| |||||| ||| | |||||||||||||| ||||| ||| || | ||||||||||||||
Sbjct 215 GGTATCGACGGAGCCGGAAACATCAGATTTATTCACTGGTAAAGCAGAAGAAAGGTGTCC 274
Query 240 TAAAGGACAAGTACCAATTCACATACCGCAAATTAACTATACTAATAACTTTAG-CCAGC 298
|||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| |
Sbjct 275 TAAAGGACAAGTACCAATTCACATACCGCAAATTAACTATACTAATGACTTT-GTCCAAC 333
Query 299 CGAAGAAAATAATTACAGAAGCCAATCTACATTATGCAATTATTAGACCATTTGAGAATT 358
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 CGAATAGAATAATTACAGAAGCCAATCTACATTATGCAATTATTAGACCATTTGAGAATT 393
Query 359 ACACAAAGAGATGGGATGGAGCGCAAGCGGTGTTCAATATTTACAAACCAGGAGTATTGG 418
||||||||| ||||| ||||||||||||||| |||||||||||||||||| ||||||| |
Sbjct 394 ACACAAAGATATGGGGTGGAGCGCAAGCGGTTTTCAATATTTACAAACCACGAGTATT-G 452
Query 419 A-AAATCAATTTAGTAAAGCTTGGATTTGGCTAAATCACAGAGAAAAAGATGTAATAAGC 477
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 AGAAATCAATTTAGTAAAGCTTGGATTTGGCTAAATCACAGAGAAAAAGATGTAATAAGC 512
Query 478 AGCATCCAATTTGGTTGGGCTGTGCATACAGGATTGTACCGAGATGATCGTCCAAGGTTA 537
|||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||
Sbjct 513 AGCATCCAATTTGGTTGGGCAGTGCATATAGGATTGTACCGAGATGATCGCCCAAGGTTA 572
Query 538 ACAACATACTGGATATCAAGTAGACACCCAAACGGATGCTACAACGCT-TTATGTCGAGG 596
||||||||||||||||||| | |||||| ||||||||||||||| | | |||||||||||
Sbjct 573 ACAACATACTGGATATCAAATCGACACCAAAACGGATGCTACAATG-TGTTATGTCGAGG 631
Query 597 AGGCTATGTCCAAGTCCATAAAACAATCTACCCCGGTATGGTTTACCATAAAGTTAGTA- 655
||| ||||||||||||||||| ||||||||||||||||||| |||| ||||| |||||
Sbjct 632 AGGATATGTCCAAGTCCATAAGACAATCTACCCCGGTATGGCTTACAATAAAATTAGTGT 691
Query 656 CTTTAGGCAAAAGACAGTCCACTGCTCATCTTCTCGTCGGTCAGGATTCCAGAACAAAAA 715
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 CTT-AGGCAAAAGACAGTCCACTGCTCATCTTCTCGTCGGTCAGGATTCCAGAACAAAAA 750
Query 716 ACTGGTTATTGATGACGAGATCAACCTTGATAGGCTATTGGCCTTATCAAATTTATTCGA 775
|||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct 751 ACTGGTTATTGATGACGAGAAAAACCTTGATAGGCTATTGGCCCTATCAAATTTTTTCGA 810
Query 776 TGCAAGGAGCATCACAAGTTTTATTCGGCGGGTATACAGGGGGGCTAGCTGGAGCTACCA 835
||||||||| |||||||||||| |||||||| |||||||||||| |||||||||||| ||
Sbjct 811 TGCAAGGAGTATCACAAGTTTTCTTCGGCGGATATACAGGGGGGTTAGCTGGAGCTATCA 870
Query 836 GCCCTCCTATGGGGGCAGGGACTTTTCCGAAAGAAGTAGGATATCGAAACAAGTTTTCAT 895
||||||||||||||||||| |||||||||| | ||||||||||||||||||||||| |||
Sbjct 871 GCCCTCCTATGGGGGCAGGAACTTTTCCGAGACAAGTAGGATATCGAAACAAGTTTGCAT 930
Query 896 GTTTCATGAAACAACTTAAGTGTTTTGAGGACAAAAGACTAGTAGATATTGACTCGAATG 955
||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||| |
Sbjct 931 GTTTCATGAAACAACTTAAGTATTTTGAGGATAAAAGACTAGTAGATATTGATTCGAACG 990
Query 956 AGTTTGAGGAATATGTGGATAGTCCGAAGTGTTATGATGTATGGTTTCGTAAGTTTGAAA 1015
||||||||||||||||||||||||| |||||||| |||||||||| ||| |||||||||
Sbjct 991 AGTTTGAGGAATATGTGGATAGTCCAAAGTGTTACGATGTATGGTATCGCGAGTTTGAAA 1050
Query 1016 TAGGCCAAG-G-AGAGATGCTCACCTTCGGTGGACCTGGTGGACAGTGTGGTATCTAA 1071
|| | ||| | ||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1051 TACG--AAGTGGAGAGATGCTAACCTTCGGTGGACCTGGTGGACAATGTGGTATCTAA 1106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52459569525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5