BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg329742

Length=585
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G17850.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   630    4e-180


> AT4G17850.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT3G02890.1); 
Has 200 Blast hits to 194 proteins in 51 species: 
Archae - 0; Bacteria - 0; Metazoa - 61; Fungi - 11; Plants 
- 116; Viruses - 0; Other Eukaryotes - 12 (source: NCBI 
BLink). | chr4:9922990-9923850 FORWARD LENGTH=564
Length=564

 Score =  630 bits (341),  Expect = 4e-180
 Identities = 491/561 (88%), Gaps = 20/561 (4%)
 Strand=Plus/Plus

Query  1    ATGACATCGTATGTGCAGCCTGA---TGA---CGATAGTGTTGAAAATAAAGAAGTTGCA  54
            ||||||||||||||||||| |||   |||   |||||||||| |||||  ||||||||||
Sbjct  1    ATGACATCGTATGTGCAGCATGATGGTGATGGCGATAGTGTTAAAAATGCAGAAGTTGCA  60

Query  55   GAAGCTATATTCCTTGATGATAACAATG-ACTTGTCTCATATTGAGGGAGAAATAACTGT  113
            || ||||||   ||  |||||||||||| || |||||||||||||| |||||||||||||
Sbjct  61   GAGGCTATA---CTCAATGATAACAATGAAC-TGTCTCATATTGAGCGAGAAATAACTGT  116

Query  114  TTGTGATACATGTGGT-ATTCAAGGATTTGAAGATTTACTTGTGATATGTTGCAACTGCA  172
            |||||||||||||||| || ||||||| |||| ||||||||||||| |||||||||||| 
Sbjct  117  TTGTGATACATGTGGTGAT-CAAGGATATGAATATTTACTTGTGATCTGTTGCAACTGCG  175

Query  173  AAGTTGGTGCTGAACATACTTATTGCATGATGaaaaaaaTAGATAAGGTTCCCGATAATT  232
             ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct  176  GAGTTGGTGCAGAACATACTTATTGCATGATGGAAAAAATAGATAAGGTTCCCGATAGTT  235

Query  233  GGTCTTGCTATGAATGCACTGAAGAGTTAGATGGAATGCGAGAAGAAAAGGGAAATGAAG  292
            ||||||||||||| |||||| ||||| |||||| ||||||||||||||| ||||||||||
Sbjct  236  GGTCTTGCTATGACTGCACTAAAGAGGTAGATGAAATGCGAGAAGAAAAAGGAAATGAAG  295

Query  293  AAACCAACTCTAGAAAAAGGAAAGCAGATGCTGTTATTGATTATTTT-GAGGCATCAGAA  351
            |||||| ||||||||||||||||||||||||||||| | ||| |||| ||| || |||||
Sbjct  296  AAACCAGCTCTAGAAAAAGGAAAGCAGATGCTGTTACTAATT-TTTTCGAGACAGCAGAA  354

Query  352  AAAATATCATCTCAAAGACAAACTAATTTGTTGAATACACAAAGTAATCCTAAAATCGGA  411
            |||| ||||||||||||||||  | |||||||||| ||| ||||| ||||||||||  ||
Sbjct  355  AAAACATCATCTCAAAGACAATTTGATTTGTTGAACACAGAAAGTTATCCTAAAATTAGA  414

Query  412  GATGTTAACTTGAACGTGGACCTTAACATAAAACTAGATGAAGTCCCTGGTATAGATATT  471
             || || | ||||||||||||| |||||||||||||| |||| || ||||||||||||| 
Sbjct  415  AATTTTGATTTGAACGTGGACCCTAACATAAAACTAGGTGAAATCTCTGGTATAGATATG  474

Query  472  AACAAAGTCCATGGCATAGATCTGAACATAG--ATCCTAACATGGAACTAGGTGAAGTTC  529
             ||||||| |||| ||||||||| || ||||  |||||||||| |||||||||||||| |
Sbjct  475  GACAAAGTACATGACATAGATCT-AA-ATAGGGATCCTAACATAGAACTAGGTGAAGTCC  532

Query  530  CTGGTATAGATATGAACGAAA  550
            ||||||||||||| ||| |||
Sbjct  533  CTGGTATAGATATAAAC-AAA  552



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28131122320


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5