BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329751
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17760.1 | Symbols: | damaged DNA binding;exodeoxyribonucle... 1458 0.0
> AT4G17760.1 | Symbols: | damaged DNA binding;exodeoxyribonuclease
IIIs | chr4:9871789-9873373 FORWARD LENGTH=1050
Length=1050
Score = 1458 bits (789), Expect = 0.0
Identities = 866/904 (96%), Gaps = 2/904 (0%)
Strand=Plus/Plus
Query 1 ATGAGTTCGTCCTCGTCACCGGCGATTGAACCAGACACGCCGGACCTAATTTGCCAGCTC 60
||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 32 ATGAGTTCGTCCTCGTCGCCGGCGATTGAACCAGACACACCGGACCTGATTTGCCAGCTC 91
Query 61 GATAATGTTCAAGGCATGGTCGATGCACTCACTTGCGTCCGATGGAAACGCCACCAGGAT 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 92 GATAATGTTCAAGGAATGGTCGATGCACTCACTTGCGTCCGATGGAAACGCCACCAGGAT 151
Query 121 GCTTTAGTAGAATTATCTGAGCACGGAATAGTTTTAATTGTGGAGGAATCAGGTTGTCTT 180
|||||||||||||||||||| |||||||||||||| ||||| || |||||||||||||||
Sbjct 152 GCTTTAGTAGAATTATCTGAACACGGAATAGTTTTGATTGTTGAAGAATCAGGTTGTCTT 211
Query 181 CAAGCCAAAGTTTATCTTCAACGCGAGCTATTCACGAAATACGAGTATGGAGCTCAAGGT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 CAAGCCAAAGTTTATCTTCAACGCGAGCTATTCACGAAATACGAGTATGGAGCTCAAGGT 271
Query 241 AGGCCGAGATTTGGAATCAGCTTAGGTCTTCTTGTTGATTGCTTGAACACATTTTCATCA 300
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 272 AGGCCGAGATTCGGAATCAGCTTAGGGCTTCTTGTTGATTGCTTGAACACATTTTCATCA 331
Query 301 CCTGGACATTCAAATACTATTGAAATCAAGTATCCAGGACCTGATATGGAGCTTCTTCTC 360
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 332 CCTGGACATTCTAATACTATAGAAATCAAGTATCCAGGACCTGATATGGAGCTTCTTCTC 391
Query 361 AAATCTGTTGATACCTTAAACGCTTGCATCTACTCTGAGATAAGAACGAGAA-TCCCGGA 419
||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||| ||
Sbjct 392 AAATCTGTTGATACCTTAAACTCTTGCATCTACTCTGAGATAAGAACTAGAATTCCC-GA 450
Query 420 AACCGTCACATGGGACTACAACTTTGAGCAGGCAGGAAGCGCGCCACTTACTTTTACCGT 479
||| || || ||||||||||||||||||||||| |||| |||||||||||||||||| ||
Sbjct 451 AACTGTTACTTGGGACTACAACTTTGAGCAGGCGGGAATCGCGCCACTTACTTTTACAGT 510
Query 480 AAAGTCAGCGGCGTTGAAGGAAGCAATAGATGATCTTGAATGGCCTGGATCAAGTGTACA 539
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 511 AAAGTCAGCGGCGTTGAAGGAAGCAATAGATGATCTTGAATGGCCTGGTTCAAGTGTACA 570
Query 540 GATCAGCCTTCAAAAGGAACCCCCTTGTGTTATCTTCAGAGGAGAAGGACATGGAGACCT 599
|||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
Sbjct 571 GATCAGTCTTCAAAAGGAACCCCCTTGTGTAATCTTTAGAGGAGAAGGACATGGAGACTT 630
Query 600 ACAGATAGACTTCATGTATTATGCCAACACAGATCTTCTCCTTGCCTTTCATTGTGATAC 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 GCAGATAGACTTCATGTATTATGCCAACACAGATCTTCTCCTTGCCTTTCATTGTGATAC 690
Query 660 CGAAGTCTCTTACGGGTACAAATACAAGTTTTTGAAGGCAACAACCGCAAATATACCAGG 719
|||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||
Sbjct 691 CGAAGTCTCTTACGGGTACAAATACAAGTTTTTGAAAGCAACAACGGCAAACATACCGGG 750
Query 720 AAACGTAGTGAGAGAAAACAGGGGAAGCAAACTGACAATAGGAAGAGGCGGAATGTTGAA 779
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 751 AAACGTAGTGAGAGAAAACAGGGGAAGCAAACTAACAATAGGAAGAGGAGGAATGTTGAA 810
Query 780 AGTTCAGCACTTGGTTTCAGTTGCTAAAGCTTTAGCTCCACAAGTGGAATCTGCAGGGTA 839
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 811 AGTTCAGCACTTGGTTTCAGTTTCTAAAGCTTTAGCTCCACAAGTGGAATCCGCAGGGTA 870
Query 840 TCAGCCACCGAGTCGGATTGCTTATATAGAGTTCTTTGTGAAGCCCGAAGAACCTGCTGA 899
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 871 TCAGCCACCGAGTCGGATTGCTTATATAGAGTTCTTTGTGAAGCCTGAAGAGCCTGCTGA 930
Query 900 TTAA 903
||||
Sbjct 931 TTAA 934
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44105581066
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5