BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329753
Length=1548
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17740.1 | Symbols: | Peptidase S41 family protein | chr4:9... 2538 0.0
> AT4G17740.1 | Symbols: | Peptidase S41 family protein | chr4:9866977-9869752
REVERSE LENGTH=1692
Length=1692
Score = 2538 bits (1374), Expect = 0.0
Identities = 1491/1549 (96%), Gaps = 2/1549 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGTCCTTGCGAGTTCTTCATTATCCCCAtttttttttACTAAGCCTAACAAAATA 60
||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 34 ATGGAGGTCCTTGCGAGCTCTTCATTATCCCCAATTTCTTTTACTAAGCCTAACAAAATA 93
Query 61 AACCCTAATTTCTCAATCCAGGTGAAATTGTGGGTGACTCAACCTCCAAAGATTTCAAAA 120
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 94 AACCCTAATTTCTCAATCCAGGTGAAATTGTGGGTAAAACAACCTCCAAAGATTTCAAAA 153
Query 121 GCAAGCAACTTTAGTTATGGTCGTAGTCGTAGTAACAAATCAAGGAGCAATGCAACAAAC 180
|| ||||| |||||||||| ||||||||||||||||| ||||||||||||||| |||||
Sbjct 154 GCTAGCAAATTTAGTTATGCTCGTAGTCGTAGTAACATTTCAAGGAGCAATGCAGCAAAC 213
Query 181 CCAGGAGTCGTATTCGTCTGTAATAGATTTCTGTGTGTTATCGAAAGAAATGATGAGAGG 240
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 214 CCAGGAGTCGTGTTCGTCTGTAATAGATTTCTGTGTGTTATCGAAAGAAATGATCAGAGG 273
Query 241 AAATTCTCTGGGAAGGTTATGATGAAATCTTCAGTTAATTTCAGACAGAATCTCTCTGTT 300
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 274 AAATTATCTGGGAAGGTTATGATGAAATCTTCTGTTAATTTCAGACAGAATCTCTCTGTT 333
Query 301 GCATTTGTTCGGATAGTTTCTGTTCTGCTTGTCTCTTCCATTTCTGTTGTCACCACTGAT 360
||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 334 GCATTAGTTCGGATCGTTTCTGTTCTGCTTGTCTCTTCCATTTCTGTTGTTACCACTGAT 393
Query 361 TCACCACCATCATGGGGTCTTAGTGAGGAGAATCTTCTCTTCCTCGAGGCTTGGAGAACA 420
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 394 TCACCACCATCATGGGGTCTTACTGAAGAGAATCTTCTCTTCCTCGAGGCTTGGAGAACA 453
Query 421 ATTGATCGAGCATATATTGATAAAACCTTTAATGGACAAAGCTGGTTTCGTTACAGAGAG 480
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 ATTGATCGTGCTTATATTGATAAAACCTTTAATGGACAAAGCTGGTTTCGTTACAGAGAG 513
Query 481 ACTGCTTTACGCAATGAGCCTATGAACACTCGAGAAGAGACATACATGGCTATCAAGAAA 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 ACTGCTTTACGAAATGAGCCTATGAACACTCGAGAAGAGACATACATGGCTATCAAGAAA 573
Query 541 ATGGTTGCAACACTAGATGATCCTTTTACTCGATTCTTGGAGCCCGGAAAGTTTAAGAGT 600
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 574 ATGGTGGCAACACTAGATGATCCTTTTACTCGATTCTTGGAGCCCGGAAAGTTCAAGAGT 633
Query 601 TTGCGGTCCGGGACTCAAGGGGCTGTTACAGGTGTTGGGCTGTCGATAGGTTACCCCGCT 660
|||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| ||
Sbjct 634 TTGCGGTCGGGGACTCAAGGGGCGGTTACGGGTGTTGGGCTGTCGATAGGTTACCCCACT 693
Query 661 GCATCAGATGGACCACCAGCTGGGCTTGTTGTTATATCAGCTGCTCCAGGAGGTCCTGCA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 GCATCAGATGGACCACCAGCTGGGCTTGTTGTTATATCAGCTGCTCCAGGAGGTCCTGCA 753
Query 721 AATAGGGCGGGAAT-TTCACCTGGCGATGTTATTCTAGGAATTGATAATACAACCACAGA 779
||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 754 AATAGGGCGGGGATATT-ACCTGGCGATGTTATTCAAGGAATTGATAATACAACCACAGA 812
Query 780 AACTCTGACCATATACGATGCTGCACAGATGTTGCAGGGACCTGAAGGAAGTACAGTGGA 839
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 813 AACTCTTACCATATACGATGCTGCACAGATGTTGCAGGGACCTGAAGGAAGTGCAGTGGA 872
Query 840 GCTAGCAATTCGTAGTGGACCTGAAACGAAACTCTTAACTTTGACGCGAGAGCGGGTTTC 899
|||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 873 GCTAGCGATTCGCAGTGGACCTGAAACGAGACTCTTAACTTTGACGCGAGAGCGGGTTTC 932
Query 900 TGTGAATCCGGTGAAGTCAAGATTATGTGAACTTCCTGGTTCTGGGGGTAATTCCCCTAA 959
||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 933 TGTGAATCCAGTGAAGTCAAGATTATGTGAACTTCCTGGTTCTGGGAGTAACTCCCCTAA 992
Query 960 GATTGGGTATATCAAGCTAACAACATTCAATCAAAATGCTTCTAGTGCGGTAAGGGAAGC 1019
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 GATTGGCTATATCAAGCTAACAACATTCAATCAAAATGCTTCTAGTGCGGTAAGGGAAGC 1052
Query 1020 AATTGAAACTTTGAGAGGCAACCATGTAAATGCATTTGTCTTGGACCTTCGAGACAATAG 1079
|||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||||||
Sbjct 1053 TATTGAAACCTTGAGAGGCAACAATGTAAACGCATTCGTCTTGGACCTTCGAGACAATAG 1112
Query 1080 TGGAGGTTCTTTCCCAGAAGGAATTGAGATTGCTAAATTTTGGTTAGATAAAGGAGTGAT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 TGGAGGTTCTTTCCCAGAAGGAATTGAGATTGCTAAATTTTGGTTAGATAAAGGAGTGAT 1172
Query 1140 TGTGTATATTTGCGATAGTCGTGGTGTTAGAGATATATATGATACTGATGGAAGCAATGC 1199
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1173 TGTGTATATTTGCGATAGTCGAGGTGTTAGAGATATATATGATACTGATGGAAGCAATGC 1232
Query 1200 TATAGCAATCTCTGAGCCTCTTGCCGTTCTCGTTAACAAAGGCACCGCGAGTGCCAGCGA 1259
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1233 TATAGCAACCTCTGAGCCTCTTGCCGTTCTTGTTAACAAAGGCACCGCGAGTGCCAGCGA 1292
Query 1260 GATATTAGCAGGCGCCTTGAAAGATAACAAACGTGCTCTGGTTTATGGAGAACCAACTTA 1319
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1293 GATATTAGCAGGTGCCTTGAAAGATAATAAACGTGCTCTGGTTTATGGAGAACCAACTTA 1352
Query 1320 CGGAAAAGGCAAGATACAGTCAGTGTTTGAGCTTTCTGATGGTTCGGGCTTGGCAGTAAC 1379
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1353 CGGAAAAGGCAAGATACAGTCGGTTTTTGAGCTTTCTGATGGTTCGGGCTTGGCAGTAAC 1412
Query 1380 AGTTGCTCGATATGAAACACCAGCTCACACAGATATAGACAAGGTCGGTGTTACTCCTGA 1439
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1413 AGTTGCTCGATATGAAACACCAGCTCACACAGATATAGACAAAGTCGGTGTAACTCCTGA 1472
Query 1440 TCATCCATTGCCAAAGTCGTTTCTGAAAGATGAAGAGGCGTTCTGTGGATGCCTTAAGGA 1499
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1473 TCATCCATTGCCAAAGTCGTTTCCGAAAGATGAAGAGGCGTTCTGTGGATGCCTTAAGGA 1532
Query 1500 TCCTACAGCTGCTTGTTATCTCAATCAAGGCCTACTTTTTTCTAGATGA 1548
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1533 TCCTACAGCTGCTTGTTATCTCAATCAAGGCCTACTTTTTTCTAGATGA 1581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76405229490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5