BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg329757

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G17713.1 | Symbols:  | Putative membrane lipoprotein | chr4:...   350    5e-96


> AT4G17713.1 | Symbols:  | Putative membrane lipoprotein | chr4:9859795-9860208 
REVERSE LENGTH=300
Length=300

 Score =  350 bits (189),  Expect = 5e-96
 Identities = 268/303 (88%), Gaps = 18/303 (6%)
 Strand=Plus/Plus

Query  1    ATGCAGAAAGCAGCTTCGATATTTATCGGTCTTCTACTTTTCTCAACATGTACTCAAATT  60
            ||| |||||||||||| ||||||||||||||||||||||||||||||||| || ||||||
Sbjct  1    ATGGAGAAAGCAGCTTTGATATTTATCGGTCTTCTACTTTTCTCAACATGCACACAAATT  60

Query  61   CTGGCACAATCTTGCAAGAATG-CATCTGATTGTACTAATCTAAATTGTGCAACCAAGA-  118
            ||||||||||||||||| |||| | |||||||||||||||||||| |||||||| |||| 
Sbjct  61   CTGGCACAATCTTGCAACAATGAC-TCTGATTGTACTAATCTAAAATGTGCAACGAAGAA  119

Query  119  T--CAAGTGTGAGCAGAACAAGTGTCAATGCCTTAATGAAAGATACGTCCGCGCGATATC  176
            |  ||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||
Sbjct  120  TATCAAGTGTGAGCAGAACAAGTGTCAATGCCTTGATGAAAGATACATCCGTGCGATATC  179

Query  177  CCTTAA---GA---C---GAGGTGTAATGTTCAATCTTGCATTGACTTAT-GCAAATCAA  226
             |||||   ||   |   ||||||||||||||||||||||||||||  || ||||| |||
Sbjct  180  GCTTAACACGAGGTCACCGAGGTGTAATGTTCAATCTTGCATTGACC-ATTGCAAAGCAA  238

Query  227  AAGGCGAAGTAATTTATGTTTGTGTCT-CATACCGTTGTTATTGTCGCAAACCTCCAATG  285
             |||||||||||||||||||||| | | | |||| |||||||||||||||||||||||||
Sbjct  239  TAGGCGAAGTAATTTATGTTTGTTT-TACGTACCATTGTTATTGTCGCAAACCTCCAATG  297

Query  286  TAA  288
            |||
Sbjct  298  TAA  300



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13270685736


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5