BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg329762

Length=471
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G17670.1 | Symbols:  | Protein of unknown function (DUF581) ...   706    0.0  


> AT4G17670.1 | Symbols:  | Protein of unknown function (DUF581) 
| chr4:9833661-9834727 REVERSE LENGTH=831
Length=831

 Score =  706 bits (382),  Expect = 0.0
 Identities = 450/481 (94%), Gaps = 11/481 (2%)
 Strand=Plus/Plus

Query  1    ATGGAGGTTTCAACGAGAAAGCCTTATTTCATAGAAGAAGAAGACGATGGATTGGTTTCT  60
            ||||||||||| | |||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  65   ATGGAGGTTTCGATGAGAAAGCCTTATTTCATAGAAGAAGAAGACGATGGTTTTGTTTCT  124

Query  61   CTATCTGAGATGGAAGCTGGAGTTTCAAGT-C--CTTGTTACAACTATCCTCAGAGTTAT  117
             ||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||
Sbjct  125  TTATCTGAGATGGAAGCTGGAGTTTCAAGTCCTTCTTGTTACAACTATCCTCAGAGTTAT  184

Query  118  TA-T-T-A-C--CATCATCATCAGTACTCTGTGTCATCTCCCAGATCTGGAAAATTCCAT  171
            || | | | |  |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct  185  TATTATAACCATCATCATCATCAGTACTCTGTTTCATCTCCCAGATCTGGAAAATTTCAT  244

Query  172  GATTTTAGATTCGACAATAGCTATTACGGACA-GCCACTTCCTCATTTCTTGGACTCTTG  230
            |||||||||||||||||||||||||||||  | |  ||  ||||||||||||||||||||
Sbjct  245  GATTTTAGATTCGACAATAGCTATTACGGTTATG-GACAGCCTCATTTCTTGGACTCTTG  303

Query  231  TTTCCTCTGCAAGAAACGTCTCGGTGATAACAGAGACATCTTCATGTACAGAGGAGACAC  290
             |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  304  CTTCCTCTGCAAGAAACGTCTTGGTGATAACAGAGACATCTTCATGTACAGAGGAGACAC  363

Query  291  ACCGTTCTGTAGTgaagagtgtagagaagaacagatagagagagacgaagcaaaagagaa  350
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  364  ACCGTTCTGTAGTGAAGAGTGTAGAGAAGAACAGATAGAAAGAGACGAAGCAAAAGAGAA  423

Query  351  gaaacagagTCTGTCTTCATCTGTGAAAGCTATGAGAAGAAATGAAAAGCGAAGCTCTTC  410
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  424  GAAACAGAGTCTGTCTACATCTGTGAAAGCTATGAGAAGAAATGAAAAGCGAAGCTCTTC  483

Query  411  TACTTCTCCAACTAGATCTCGTGATTATGCTTTCCACACTGGAACTGTTGCTGCTGCCTA  470
            | |||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||
Sbjct  484  TTCTTCTCCAACTAGATCTCGTAACTATGCTTTCCGCACTGGAACTGTTGCTGCTGCCTA  543

Query  471  A  471
            |
Sbjct  544  A  544



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22404429562


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5