BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329810
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17180.1 | Symbols: | O-Glycosyl hydrolases family 17 prote... 2207 0.0
> AT4G17180.1 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr4:9646505-9648295 FORWARD LENGTH=1714
Length=1714
Score = 2207 bits (1195), Expect = 0.0
Identities = 1346/1419 (95%), Gaps = 9/1419 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAGCGGTGTAGGTGCAGTAGCTCTCTGTATCTTCTTCCTTCTTCTCGTAC-CCCA 59
|||||||||||||||||| |||||||||| | | ||| |||||||||||| | ||||
Sbjct 37 ATGGGAAGCGGTGTAGGT---GTAGCTCTCTTTGCCCTCTCCCTTCTTCTCGT-CTCCCA 92
Query 60 TGAGGTTGAGTCAGCAATCGGTGTAAACTGGGGATCGTTGTCGCTTCACAAGATGAGACC 119
|||||| || || |||||||| || ||||||||| ||||||| ||||||||||||||||
Sbjct 93 TGAGGTGGAATCTGCAATCGGCGTGAACTGGGGAACGTTGTCATTTCACAAGATGAGACC 152
Query 120 TTCCACTGTAGTGGATCTCCTCAAAGCAAACAAGATCACCAAAGTTAAGCTCTTCGATTC 179
|||||| || |||||||||||||||||||||||||||||||| || ||||| |||||| |
Sbjct 153 TTCCACAGTGGTGGATCTCCTCAAAGCAAACAAGATCACCAAGGTGAAGCTTTTCGATGC 212
Query 180 GAATCCAGATGCGCTTCGAGC-TCTAATGGGTACTGGAATCCAAGTAATGGTCGGCATTC 238
||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||
Sbjct 213 GAATCCAGATGCGCTTCGAGCGT-TAATGGGTACTGGAATCCAAGTAATGATCGGCATTC 271
Query 239 CTAACGAGATGCTCTCAATTTTCGATTCTGATTTGTTTGTCCAGCAAAATCTCTCTCGCT 298
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 272 CTAACGAGATGCTCTCAACTTTCAATTCTGATTTGTTTGTCCAGCAAAATCTCTCTCGCT 331
Query 299 TCATCGGCAAAAACGGTGCTGATATTAGGTATGTTGCAGTAGGGAATGAGCCGTTTTTGA 358
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 332 TCATAGGCAAAAACGGTGCTGATATTAGGTATGTTGCAGTAGGGAATGAGCCGTTTCTGA 391
Query 359 CGGGTTATGGTGGGCAGTTTCAGAACTATGTAGTCCCAGCTATGGTTAACCTGCAACAAT 418
| ||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 392 CTGGTTACGGTGGTCAGTTTCAGAACTATGTAGTCCCAACTATGGTTAACCTGCAACAAT 451
Query 419 CTTTGGTTAAAGCAAATCTAGCTAGCTATGTGAAGTTGGTGGTTCCTTGCAACGCAGATG 478
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 CTTTGGTTAGAGCAAATCTAGCTAGCTATGTGAAGTTGGTGGTTCCTTGCAACGCAGATG 511
Query 479 CGTATGAGTCTAATGTTCCCTCTCAGGGGATGTTCCGGCCTGAGCTTACACAGATTATGA 538
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 CGTATCAGTCTAATGTTCCCTCTCAGGGGATGTTCCGGCCTGAGCTTACACAGATTATGA 571
Query 539 CTCAGTTGGTTTCGTTTCTCAA-TACCAATGGATCTCCTTTTGTGGTTAATATCTATCCT 597
|||| ||||||||||||||||| | ||||||| |||||||||||||||||||||||||||
Sbjct 572 CTCAATTGGTTTCGTTTCTCAACT-CCAATGGCTCTCCTTTTGTGGTTAATATCTATCCT 630
Query 598 TTCCTTAGTCTCTATGGAAACTCGGATTTTCCGCAAGACTATGCtttttttGAGGGAAGT 657
||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 631 TTCCTTAGTCTCTATGGGAACTCGGATTTTCCACAAGACTATGCCTTTTTTGAGGGGAGT 690
Query 658 AGTCATCCGGTTCCGGATGGGCCTAACACTTACTATAATGCATTTGATGGGAACTTTGAC 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 AGTCATCCGGTTCCGGATGGGCCTAACACTTACTATAATGCATTTGATGGGAACTTTGAC 750
Query 718 ACTCTTGTTGCTGCTCTCACCAAGCTTGGATATGGTCAAATGCCTATAGTTATTGGTGAG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 ACTCTTGTTGCTGCTCTCACCAAGCTTGGATATGGTCAAATGCCTATAGTTATTGGTGAG 810
Query 778 ATTGGTTGGCCAACGGATGGAGCTGTTGGTGCTAATCTCACGGCAGCCCGGGTTTTTAAT 837
||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 811 ATTGGTTGGCCTACAGATGGAGCAGTTGGTGCTAATCTCACAGCAGCCCGGGTTTTTAAT 870
Query 838 CAAGGGCTCATTAGCCATGTGTTGAGCAACAAAGGAACACCGCTCAGGCCTGGCTCCCCT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 871 CAAGGGCTCATTAGCCATGTGTTGAGCAACAAAGGAACACCGCTCAGGCCTGGATCTCCT 930
Query 898 CCTGCAGATGTTTATCTTTTCGGTTTGCTTGACGAAGGAGCCAAAAGCACACTGCCTGGT 957
||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 931 CCTGCGGATGTATATCTTTTCGGTTTGCTTGACGAAGGAGCGAAAAGCACACTGCCTGGT 990
Query 958 AACTTTGAGAGGCATTGGGGAATTTTCTCTTTCGATGGACAGGCCAAGTATCGTCTCAAT 1017
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 991 AACTTTGAGAGGCATTGGGGAATCTTCTCTTTCGATGGACAGGCCAAGTATCGTCTCAAC 1050
Query 1018 TTAGGACTAGGCAACAGAGGACTCAAGAATGCGAAAAATGTGCAGTACCTTCCTTCCAGA 1077
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1051 TTAGGACTAGGCAACAGAGGACTCAAGAATGCAAAAAATGTGCAGTACCTTCCTTCAAGG 1110
Query 1078 TGGTGTGTGGCTCATCCATCAAAAGACATGACCCAAGTTGGAGACCACCTCAGGCTTGCT 1137
|||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1111 TGGTGTGTGGCTCACCCATCAAGAGACATGACCCAAGTTGGTGACCACCTCAGGCTTGCT 1170
Query 1138 TGCAGTGAAGCAGATTGCACAACGCTCAACGACGGGGGATCGTGCAGCCAGCTTGGTGAA 1197
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1171 TGCAGTGAAGCAGATTGCACAACGCTCAACGACGGGGGCTCGTGCAGCCAGCTTGGTGAA 1230
Query 1198 AAGGATAATATCTCATACGCTTTCAACAGTTACTATCAGATGCAGATGCAACATGAAAAG 1257
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 AAAGATAATATCTCATACGCTTTCAACAGTTACTATCAGATGCAGATGCAACATGAAAAG 1290
Query 1258 AGCTGTGACTTTGATGGACTGGGCATGGTCACCTTCCTAGATCCTTCAGTTGGGGATTGT 1317
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 1291 AGCTGTGACTTTGATGGACTTGGCATGGTCACCTTCCTAGATCCTTCAGTTGGTGACTGT 1350
Query 1318 CGATTTCTTGTGGGCGTTACTGATAAAGGCTTATCCTCAAGTGCTGAGCCAATGGCAAGG 1377
|||||||||||||| |||||||||| ||||||||| |||||| |||||||||||||||||
Sbjct 1351 CGATTTCTTGTGGGTGTTACTGATATAGGCTTATCGTCAAGTACTGAGCCAATGGCAAGG 1410
Query 1378 TGGTCTATCTACCACATTTGCATTGGAGTCTTGATCTGG 1416
||||||||||||||||||||||||||| | |||||||||
Sbjct 1411 TGGTCTATCTACCACATTTGCATTGGACTATTGATCTGG 1449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70983570630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5