BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329812
Length=618
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17160.1 | Symbols: ATRAB2B, ATRABB1A, RABB1a | RAB GTPase h... 992 0.0
AT4G17170.1 | Symbols: AT-RAB2, ATRABB1C, ATRAB2A, RAB2A, RABB1... 704 0.0
> AT4G17160.1 | Symbols: ATRAB2B, ATRABB1A, RABB1a | RAB GTPase
homolog B1A | chr4:9641980-9643541 REVERSE LENGTH=618
Length=618
Score = 992 bits (537), Expect = 0.0
Identities = 593/620 (96%), Gaps = 4/620 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTATGCATATAGATTTAAGTATATCCTCATCGGTGATACTGGAGTTGGGAAATCA 60
||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1 ATGTCTTATGCTTATAGATTTAAGTATATCATCATCGGTGATACTGGAGTAGGGAAATCA 60
Query 61 TGCCTTCTGCTTAAGTTCACCGACAAGAGGTTTCAAGCGGTGCATGATCTCACCATTGGT 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TGCCTTCTGCTTAAGTTCACCGACAAGAGGTTTCAAGCAGTGCATGATCTCACCATTGGT 120
Query 121 GTTGAATTTGGGTCCAAGAAGATCACTATCGACAACATACCCATCAAACTCCAGATCTGG 180
|||||||||||| |||||| ||||||||||||||||| |||||||||||| |||||||||
Sbjct 121 GTTGAATTTGGGGCCAAGACGATCACTATCGACAACAAACCCATCAAACTTCAGATCTGG 180
Query 181 GATACGGCTGGTCAAGAATCATTTAGGTCTGTTACAAGGTCTTACTATAGAGGGCGTGCC 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 GATACGGCTGGTCAAGAATCATTTAGGTCTGTTACAAGGTCATACTATAGAGGGCGTGCC 240
Query 241 GGGACATTGCTTGTCTATGATATCACAAGGAGGGAGACATTTAACCATCTAGCCAGCTGG 300
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGTACATTGCTTGTATATGATATCACAAGGAGGGAGACATTTAACCATCTAGCCAGCTGG 300
Query 301 CTAGAAGAGGCAAGGCGGCATGCAAGTGAAAATATGACGACAATGCTCATTGGGAATAAG 360
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTAGAAGAGGCAAGACAGCATGCAAGTGAAAATATGACGACAATGCTCATTGGGAATAAG 360
Query 361 TGTGATCTTGAAGAGAAAAGGGCAGTGAGTACAGAGGAAGGAGAGCAGTTTGCAAGGGAG 420
|||||||||||||| |||||| |||||||||||||||||||||| |||||||| ||||||
Sbjct 361 TGTGATCTTGAAGATAAAAGGACAGTGAGTACAGAGGAAGGAGAACAGTTTGCTAGGGAG 420
Query 421 CATGGTCTTATATTCATGGAGGCCTCTGCCAAGACTGCTCACAATGTCGAGGAGGCATTC 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 CATGGTCTTATATTCATGGAGGCCTCTGCTAAGACTGCTCACAATGTCGAGGAGGCATTC 480
Query 481 ATCGAGACAGCCGCAACAATATACAAAAGGATTCAAGATGGTGTGGTTGATGAGGCAAAT 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTCGAGACAGCCGCAACAATATACAAAAGGATTCAAGATGGTGTGGTTGATGAGGCAAAT 540
Query 541 GAGCCTGGAATAACTCCAGGGCCATTTGATGGATATGATGCCATC-TCCTCGA-AGCAAA 598
||||||||||||||||||||||| |||| |||| | ||||| ||| ||||| | ||||||
Sbjct 541 GAGCCTGGAATAACTCCAGGGCCGTTTGGTGGAAAAGATGC-ATCCTCCTC-ACAGCAAA 598
Query 599 GAAGAGGGTGCTGCGGCTGA 618
||||||||||||||||||||
Sbjct 599 GAAGAGGGTGCTGCGGCTGA 618
> AT4G17170.1 | Symbols: AT-RAB2, ATRABB1C, ATRAB2A, RAB2A, RABB1C,
ATRAB-B1B, RAB-B1B | RAB GTPase homolog B1C | chr4:9644713-9646366
REVERSE LENGTH=977
Length=977
Score = 704 bits (381), Expect = 0.0
Identities = 492/546 (90%), Gaps = 6/546 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTATGCATATAGATTTAAGTATATCCTCATCGGTGATACTGGAGTTGGGAAATCA 60
||||||||||| ||| || ||||||||| ||||||| ||||||||||| |||||||||
Sbjct 147 ATGTCTTATGCTTATCTCTTCAAGTATATCATCATCGGCGATACTGGAGTGGGGAAATCA 206
Query 61 TGCCTTCTGCTTAAGTTCACCGACAAGAGGTTTCAAG-CGGTGCATGATCTCACCATTGG 119
|| ||||||||| ||||||||||||||||||||| || |||||||||| || ||||||||
Sbjct 207 TGTCTTCTGCTTCAGTTCACCGACAAGAGGTTTC-AGCCGGTGCATGACCTTACCATTGG 265
Query 120 TGTTGAATTTGGGTCCAAGAAGATCACTATCGACAACATACCCATCAAACTCCAGATCTG 179
||||||||||||| | | || |||||| ||||| |||| ||| ||||| || ||||||||
Sbjct 266 TGTTGAATTTGGGGCTAGGATGATCACCATCGATAACAAACCTATCAAGCTTCAGATCTG 325
Query 180 GGATACGGCTGGTCAAGAATCATTTAGGTCTGTTACAAGGTCTTACTATAGAGG-GCGTG 238
||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| || ||
Sbjct 326 GGATACGGCTGGTCAAGAATCCTTTAGGTCTATTACAAGGTCATACTATAGAGGAGC-TG 384
Query 239 CCGGGACATTGCTTGTCTATGATATCACAAGGAGGGAGACATTTAACCATCTAGCCAGCT 298
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 385 CAGGGGCATTGCTTGTCTATGATATCACAAGGAGGGAGACATTTAACCATCTAGCTAGCT 444
Query 299 GGCTAGAAGAGGCAAGGCGGCATGCAAGTGAAAATATGACGACAATGCTCATTGGGAATA 358
|||||||||| ||||||| |||||||| || ||||||||||| |||||||||||||||||
Sbjct 445 GGCTAGAAGATGCAAGGCAGCATGCAAATGCAAATATGACGATAATGCTCATTGGGAATA 504
Query 359 AGTGTGATCTTGAAGAGAAAAGGGCAGTGAGTACAGAGGAAGGAGAGCAGTTTGCAAGGG 418
|||||||||||| | | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 505 AGTGTGATCTTGCTCACAGAAGGGCAGTGAGTACAGAGGAAGGAGAGCAGTTTGCAAAGG 564
Query 419 AGCATGGTCTTATATTCATGGAGGCCTCTGCCAAGACTGCTCACAATGTCGAGGAGGCAT 478
|||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 565 AGCACGGTCTTATATTCATGGAGGCCTCTGCCAAGACTGCTCAGAATGTTGAGGAGGCAT 624
Query 479 TCATCGAGACAGCCGCAACAATATACAA-AAGGATTCAAGATGGTGTGGTTGATGAGGCA 537
|||| ||||||| |||||||||||||| ||| ||||||||||||||| |||||| | ||
Sbjct 625 TCATTAAGACAGCTGCAACAATATACAAGAAG-ATTCAAGATGGTGTGTTTGATGTGTCA 683
Query 538 AATGAG 543
||||||
Sbjct 684 AATGAG 689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29788849171
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5