BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg329817

Length=174
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G17085.1 | Symbols:  | Putative membrane lipoprotein | chr4:...   244    1e-64


> AT4G17085.1 | Symbols:  | Putative membrane lipoprotein | chr4:9604502-9604974 
FORWARD LENGTH=369
Length=369

 Score =  244 bits (132),  Expect = 1e-64
 Identities = 161/175 (92%), Gaps = 2/175 (1%)
 Strand=Plus/Plus

Query  1    ATGCAGAAATCGTTCACGTTGATCCAAACAGTGGCAATCTCCGGCGTGTTCTCCGCCGTC  60
            ||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  26   ATGCAAAAATCGTTCTCGTTGATCCAAACAGTGGCAATCTCCGGCGTATTCTCCGCCGTC  85

Query  61   TCTTGCTGGTATGGATTCATGTTCGGTAGAGAATCCGCGAGAAAAGAGCTCGGCGGTTTA  120
            || |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| 
Sbjct  86   TCATGCTGGTATGGATTCATGTTCGGTAGAGAATCAGCGAGAAAAGAGCTCGGAGGTTTG  145

Query  121  ATTGAAGAGCTCCGCCGTGGAGGTTCCAACTCTGATTCTC-CTCCCCATTCATGA  174
            || ||||||||||| |||||||| ||||| |||||||| | |||||||||| |||
Sbjct  146  ATCGAAGAGCTCCGTCGTGGAGGCTCCAATTCTGATTC-CACTCCCCATTCCTGA  199



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7595504001


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5