BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329829
Length=2562
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16835.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1400 0.0
AT4G16840.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 335 1e-90
AT4G16845.1 | Symbols: VRN2 | VEFS-Box of polycomb protein | ch... 322 1e-86
> AT4G16835.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:9472763-9474803 FORWARD LENGTH=1971
Length=1971
Score = 1400 bits (758), Expect = 0.0
Identities = 875/932 (94%), Gaps = 6/932 (1%)
Strand=Plus/Plus
Query 1 ATGCTTTCTCGCTTCAACATTCATCAGCCATTAAAACGCTGGAAATTTCGATTCTTTTCG 60
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
Sbjct 1 ATGCTTTCTCGCTTCAACATTCATCAGCCATTTAAACGCTGTAAATTTCGATTCTTTTTG 60
Query 61 CGCT-CAGTAGAAAACCCAGATGCCATTTTGGTGGGATCATGTTTGTCTT-CTACTTGTT 118
|| | || | | |||||||||| |||||||||||| |||||||| ||||| || ||||||
Sbjct 61 CGTTCCA-TTGGAAACCCAGATACCATTTTGGTGGAATCATGTTCGTCTTCCT-CTTGTT 118
Query 119 CATCGCCAGAGCCATCTCTGGTTCGCTCCGATCACTTGACTAAACCTTCTGATGAAGACC 178
||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||
Sbjct 119 CATCGCCAGAGCCATCTCTGGTTCGTTCCGATTACTTGACTAAACCTTCTGATCAAGACC 178
Query 179 AGATTTTTCCGTTGAACAAGATTATAGCTACACGTGTACGTTCAGGAGATATTGATGGAG 238
|||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||
Sbjct 179 AGATTTTTCCGTTGAACAAGATAATAGCTAGGTGTGTACGTTCAGGAGATATAGATGGAG 238
Query 239 CTCTTAGTGTGTTTCACGGAATGAGAGCTAAGAACA-CAGTTTCCTGGAATTCTCTGCTC 297
||||||| |||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 239 CTCTTAGAGTGTTTCACGGAATGAGAGCTAAGAACACCA-TTACCTGGAATTCTCTGCTC 297
Query 298 GTGGGGATTTCTAAAGATCCAAGCAGAATGATGGAAGCACACCAACTGTTCGATGAAATC 357
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 298 ATTGGGATTTCTAAAGATCCAAGCAGAATGATGGAAGCACACCAACTGTTCGACGAAATC 357
Query 358 CCTGAACCAGATACTTTCTCCTACAACATTATGTTGTCTTGCTACGTTCGTAACGGAAAC 417
|||||||||||||||||||| || ||||||||||||||||||||||||||||| | |||
Sbjct 358 CCTGAACCAGATACTTTCTCTTATAACATTATGTTGTCTTGCTACGTTCGTAATGTTAAC 417
Query 418 TTCGAGAAGGCCCAGAGCTTCTTCAATCGGATGCCATTCAAGGATGCGGCGTCATGGAAC 477
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 418 TTCGAGAAGGCACAGAGCTTCTTCGATCGGATGCCATTCAAGGATGCGGCGTCATGGAAC 477
Query 478 ACAATGATCACAGGGTATGCACGAAGAGGTGAAATGGAGAAAGCACGGGTATTGTTCTAT 537
|| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 478 ACGATGATCACAGGGTATGCACGAAGAGGTGAAATGGAGAAAGCGCGGGAATTGTTCTAC 537
Query 538 TCCATGATGGAGAAGAATGAAGTTTCTTGGAATGCCATGATCTCTGGATACATTGAATGC 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TCCATGATGGAGAAGAATGAAGTTTCTTGGAATGCCATGATCTCTGGATACATTGAATGC 597
Query 598 GGAGATTTGGAAAAGGCAGCACATTTCTTCAGAGCGGCTCCATTTAGAGGCGTTGTGGCA 657
|||||||||||||||||| |||||||||||| || ||||||| |||||||||| |||||
Sbjct 598 GGAGATTTGGAAAAGGCATCACATTTCTTCAAAGTGGCTCCAGTTAGAGGCGTCGTGGCT 657
Query 658 TGGACGGCGATGATCACAGGGTACATGAAAGCCAAGAAGGTTGAATTAGCTGAGGCTATG 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 658 TGGACGGCGATGATCACAGGGTACATGAAAGCCAAGAAGGTTGAATTAGCTGAGGCAATG 717
Query 718 TTCAAAGACATGACAGTGAAGAAAAATCTTGTAACTTGGAATGCTATGATCTCTGGTTAT 777
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTCAAAGACATGACAGTGAATAAAAATCTTGTAACTTGGAATGCTATGATCTCTGGTTAT 777
Query 778 GTTGAAAATTCCCGGCCCGAAGATGGATTGAAGCTTTTCAGAGCTATGCTTGAGGAAGGA 837
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GTTGAAAATTCTAGGCCAGAAGATGGATTGAAGCTTTTCAGAGCTATGCTTGAGGAAGGA 837
Query 838 ATTAGGCCTAACTCGTCTGGACTAAGTAGCGCATTGCTCGGATGCAGCGAATTATCGGCT 897
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 838 ATTAGGCCTAACTCGTCTGGACTAAGCAGCGCATTGCTCGGATGCAGTGAATTATCGGCG 897
Query 898 TTATGTTTAGGGAGGCAAATCCATCAGATAGT 929
||| |||||||||||||| |||||||||||
Sbjct 898 TTACAATTAGGGAGGCAAATACATCAGATAGT 929
Score = 1345 bits (728), Expect = 0.0
Identities = 826/873 (95%), Gaps = 8/873 (1%)
Strand=Plus/Plus
Query 930 TATGTACTGCAAATGTGGAGAACTTGGTGATGCTTGGAAACTCTTTGAGGCGATGAAGAA 989
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 981 TATGTACTGCAAATGTGGAGAACTTGGTGATGCTTGGAAGCTCTTTGAGGTGATGAAGAA 1040
Query 990 GAAAGATGTTGTGGCGTGGAATGCAATGATTTCCGGGTATGCTCAGCACGGTAATGCGGA 1049
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1041 GAAAGATGTTGTGGCGTGGAACGCAATGATTTCCGGGTATGCTCAGCACGGTAATGCGGA 1100
Query 1050 AAAGGCTCTGTGTTTGTTCCATGAGATGAGAGATAGCAAGA-CAAAGCCGGATTGGATAA 1108
||||||||||||||||||| |||||||| ||||| ||||| || | |||||||||||||
Sbjct 1101 TAAGGCTCTGTGTTTGTTCCGTGAGATGATAGATAACAAGATCAGA-CCGGATTGGATAA 1159
Query 1109 CGTTTGTTGCGGTTTTACTGGCCTGTAACCATGCTGGACTAGTGGATATAGGGATGGCGT 1168
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
Sbjct 1160 CGTTTGTTGCGGTTTTACTGGCCTGTAACCATGCTGGACTAGTGAATATTGGGATGGCAT 1219
Query 1169 ACTTCGATTCAATGGTGAGAGATTACAGGGTAGAACCGCGGCCTGATCATTACACGTGTA 1228
| ||||| || |||||||||||||| | ||||||||||| ||||||||||||||||||||
Sbjct 1220 ATTTCGAATCGATGGTGAGAGATTATAAGGTAGAACCGCAGCCTGATCATTACACGTGTA 1279
Query 1229 TGGTTGATCTTTTGGGTCGGGCTGGGAAGCTGGAAGAGGCATTGAAACTGATAAGATCAA 1288
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1280 TGGTTGATCTTTTGGGTCGGGCTGGGAAGCTGGAGGAGGCATTGAAACTGATAAGATCAA 1339
Query 1289 TGCCGTGTAGACCGCATGCTGCAGTCTTTGGGACGCTCTTAGGGGCATGTAGAGTGCACA 1348
|||||| |||||| |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1340 TGCCGTTTAGACCTCATGCTGCGGTCTTTGGGACGCTCTTAGGGGCTTGTAGAGTGCACA 1399
Query 1349 AGAATGTGGAGTTGGCTGAATTCGCAGCTGAGAAACTGCTTGAGCTAGACCCG-AGAAAT 1407
|||||||||| ||||||||||| |||||||||||||||||| ||||| || || | ||||
Sbjct 1400 AGAATGTGGAATTGGCTGAATTTGCAGCTGAGAAACTGCTTCAGCTAAACTCGCA-AAAT 1458
Query 1408 GCAGCTGGGTATGTTCAGCTCGCGAATATCTACGCATCGAAGAATCGTTGGGAAGACGTT 1467
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1459 GCAGCCGGGTATGTGCAGCTTGCGAATATCTACGCATCGAAGAATCGTTGGGAAGACGTT 1518
Query 1468 GCAAGGGTTCGCAAGAGAATGAAAGAGAGCAATGTTGTGAAGGTACCCGGATACAGTTGG 1527
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1519 GCAAGGGTTCGCAAGAGAATGAAAGAGAGCAATGTTGTGAAGGTACCTGGATACAGTTGG 1578
Query 1528 ATCGAGATACGAAACAAGGTTCACCATTTCAGATCAAGTGATCGGATTCACCCGGAACTA 1587
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1579 ATCGAAATACGAAACAAAGTTCACCATTTCAGATCAAGTGATCGGATTCACCCTGAACTA 1638
Query 1588 GACTCAATACACAAGAAACTAAAGGAGTTGGAGA-GAAAGATGAAACTAGCTGGATACAA 1646
|||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||
Sbjct 1639 GACTCAATACACAAGAAACTGAAGGAGTTGGAGAAGAA-GATGAAACTAGCTGGATACAA 1697
Query 1647 ACCGGAGCTAGAGTTTGCTTTACACAATGTAGAAGAAGAGCAAAAGGAGAAGCTATTGTT 1706
|||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1698 ACCGGAACTAGAGTTTGCTTTACACAATGTAGAGGAAGAGCAAAAAGAGAAGCTATTGTT 1757
Query 1707 ATGGCATAGCGAGAAGTTAGCTGTTGCATTTGGTTGCATAAAACTCCCTCAAGGTTCACC 1766
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1758 ATGGCACAGCGAGAAGTTAGCTGTTGCATTTGGTTGCATAAAACTCCCTCAAGGTTCAC- 1816
Query 1767 A-ATACAAGTGTTCAAGAACTTGAGAATCTGTG 1798
| |||||||||||||||||||||||||||||||
Sbjct 1817 AGATACAAGTGTTCAAGAACTTGAGAATCTGTG 1849
> AT4G16840.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G35658.3);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:9474885-9475523 FORWARD LENGTH=451
Length=451
Score = 335 bits (181), Expect = 1e-90
Identities = 219/236 (93%), Gaps = 8/236 (3%)
Strand=Plus/Plus
Query 1798 GCGAGTGGTTCTAGAGTTTCT-GATCATTTTCCGGCG-----AA-GTCACCGCCTCGATC 1850
||||||||||||||||||| | ||||||||||||||| || ||| |||||||||||
Sbjct 42 GCGAGTGGTTCTAGAGTTT-TGGATCATTTTCCGGCGACTTCAAGGTCTCCGCCTCGATC 100
Query 1851 TCAGAGTGTTACTGCTATGGAAGATGATGTGGAGCTGCTTTTGCCTAGGTACGATCCGAA 1910
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 TCAGAGTGTTACAGCAATGGAAGATGATGTGGAGCTGCTTTTGCCTAGGTACGATCCGAA 160
Query 1911 TTCTCAAGCGGGGAAGAGAGAGAAATCAAGATTCAGATTTGCAGAAAACGTCATCCATTT 1970
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 161 TTCTCAAGCGGGGAAGAGAGAGAAATCAAGATTCAGATTTTCAGAAAACGTCATCCATTT 220
Query 1971 GATTCCTCTCATCCTTCTTCTCTGTGTCGTAATCCTCTGGCTCTTCTCTCATTCAG 2026
|||||||||||| |||||||||||||||| |||||||||||||| |||| | ||||
Sbjct 221 GATTCCTCTCATTCTTCTTCTCTGTGTCGCAATCCTCTGGCTCTCCTCTTACTCAG 276
> AT4G16845.1 | Symbols: VRN2 | VEFS-Box of polycomb protein |
chr4:9476143-9479878 FORWARD LENGTH=1708
Length=1708
Score = 322 bits (174), Expect = 1e-86
Identities = 186/192 (97%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 2340 TGAAGGAAACCGTGGTTTAGGATATCCCGAGGCAACAGAGCTTGCTGGACAATTTGAGAT 2399
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 TGATGGAAACCGTGGTTTAGGATATCCCGAGGCAACAGAGCTTGCTGGACAATTTGAGAT 879
Query 2400 GACTAGCAACATTCCACCAGCCATAGCTCACTCTTCTCTGAACGCTGGTGCTAAAGTTAT 2459
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 880 GACTAGCAACATTCCACCAGCCATAGCCCACTCTTCTCTGGACGCTGGTGCTAAAGTTAT 939
Query 2460 ATTAACAAGCGAAGCTGTGGTCCCTGCTACAAAGACAAGAAAGTTATCTGCGGAGCGATC 2519
|||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 940 ATTAACAACCGAAGCTGTGGTCCCTGCTACTAAGACAAGAAAGTTATCTGCTGAGCGATC 999
Query 2520 AGAGGCTAGAAG 2531
||||||||||||
Sbjct 1000 AGAGGCTAGAAG 1011
Score = 110 bits (59), Expect = 9e-23
Identities = 66/69 (96%), Gaps = 2/69 (3%)
Strand=Plus/Plus
Query 2277 GTCAAGATCTACTGGGATGGTAGTTTTCAACTATAAGGATTGCAATAATACATTACAGAA 2336
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 415 GTCAAGATCTACTGGGATGGTAGTTTTCAACTATAAGGATTGTAATAATACATTACA-AA 473
Query 2337 -AACTGAAG 2344
||||||||
Sbjct 474 GAACTGAAG 482
Score = 86.1 bits (46), Expect = 2e-15
Identities = 61/67 (91%), Gaps = 5/67 (7%)
Strand=Plus/Plus
Query 2042 CAAGCTTCTTCGATTTTGCTTG--CTCTCTCTTACA---CCAATCGGTGTTTTCGCAGCT 2096
||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1 CAAGCTTCTTCAATTTTGCTTGCTCTCTCTCTTACACGGCCAATCGGTGTTTTCGCAGCT 60
Query 2097 TTCAGGC 2103
|||||||
Sbjct 61 TTCAGGC 67
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127173200505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5