BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329832
Length=1821
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16807.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1825 0.0
AT4G16810.1 | Symbols: | VEFS-Box of polycomb protein | chr4:9... 494 2e-138
> AT4G16807.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT3G33528.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr4:9457317-9459394 REVERSE LENGTH=1356
Length=1356
Score = 1825 bits (988), Expect = 0.0
Identities = 1203/1306 (92%), Gaps = 18/1306 (1%)
Strand=Plus/Plus
Query 525 GGAAAATGGATACTCCGATTCAACATCTCCCATTTCCGAACCACCAGATATTACGAATTG 584
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GGAAGATGGATACTCCGATTCAACATCTCCCATTTCCGAACCACCAGATATTACGAATTG 119
Query 585 GTTTCCCAGTTATGTCTATGAATCGTTACCATTGTCTTCTTCAATCAATGAAAGCGAAAA 644
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 120 GTTTCCCAGTTATGTATATGAATCGTTACCATTGTCTTCTTCAATCAATGAAATTGAAAT 179
Query 645 CGAAGTAGATGTGGTGAACAAAGTAAATCTTGGTGGTGTTATTGATGAATCACTTCCTTC 704
||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 180 CGAAGTAGATGTGGTCAACAAAGCAAATCCTGGTGGTGTTATTGATGAATCACTTCCTTC 239
Query 705 TGAACCTCCTGATTTAGCTAATTGGTTTTCGAGCTATGTCTATGAATCACCGGTGCTGGA 764
||||||||||||||||| ||| |||||||||||||||||||||||||| ||| |||||||
Sbjct 240 TGAACCTCCTGATTTAGGTAAATGGTTTTCGAGCTATGTCTATGAATCGCCGTTGCTGGA 299
Query 765 TACAAGTGATGTTCTTGAATTGTAC-GTTCCTGGAGAAAGTGAATGTGTAAAGGAGACAC 823
||||||||||| |||||||||| | |||||||||||||||||||||||||||||||| |
Sbjct 300 TACAAGTGATGGACTTGAATTGT-CTGTTCCTGGAGAAAGTGAATGTGTAAAGGAGACCC 358
Query 824 AAATAGAAAATGAGACGCCAAAAATTGAAAGAAACCATGTTTGTCCGAGGTTATTTGAGC 883
||| |||||||||| | |||||||||||| |||| ||||||||||||||||||| ||||
Sbjct 359 AAACAGAAAATGAGTCACCAAAAATTGAAGGAAATGATGTTTGTCCGAGGTTATTAGAGC 418
Query 884 AAGAACTTGTCTCTTCTACAAAGGTTACAGATTTCTC-GCAGTCGGAGTCTGTTCTTTCG 942
||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||
Sbjct 419 AAGAACTTGTCTCTTCTACAAAGGTTACAGATTTCTCTG-AGTCGCAGTCTGTTCTTTCG 477
Query 943 GAGCCTCCTAATCTTAGAAACTGGTTTTCAAGCTATGAGTATCAATCTCCTCAGCTTTCA 1002
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GAGCCTCCTGATCTCAGAAACTGGTTTTCAAGCTATGAGTATCAATCTCCTCAGCTTTCA 537
Query 1003 GAAATTCAAGAACTTGGATTTTCT-TCTTTTGAGAAAGATGAGTTAGTCATTGAGGAGAG 1061
|| ||||||||| ||||||||| | | || |||||||||||||||| |||||||||||||
Sbjct 538 GACATTCAAGAATTTGGATTTT-TATATTCTGAGAAAGATGAGTTAATCATTGAGGAGAG 596
Query 1062 TGACACAGAGGACGGAATTAGTTCCGGTATATTTCGAAAACTTAAGAGCAAGCAAGAGAG 1121
|||||| ||||| ||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 597 TGACACTGAGGAGGGAATTAGTTCCGGTATATTTCGAAAAATTAAGAGCAGGCAAGAGA- 655
Query 1122 TACTATTGGTCTTGGCAGGTTAGATTCAAATGACTACAAGGAAAACATAGCCGCAGACAC 1181
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 656 --CTGTTGGTCTTGGCAGGTTAGATTCAAATGACTACAAGGAAAACATAGCCACAGACAC 713
Query 1182 AGCCAAGGAGGTCTCTTTAGACAATGCA-TATTCAAACCAAGAAATGGAAAAGAGGTCAT 1240
|||||||||||| ||||||||||||||| | |||| ||||| ||||||||||||||||||
Sbjct 714 AGCCAAGGAGGTTTCTTTAGACAATGCAGT-TTCAGACCAAAAAATGGAAAAGAGGTCAT 772
Query 1241 CAGTTGGATTGTTCAATGCCTCAAAGAAAGAAGCGAAACAAGAATCAAGCTTCAAGCAGG 1300
||||| ||||||| ||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 773 CAGTTAGATTGTTAAATGCCTCAAAGAAAGATGTGAAACAAGAATCAAGCTTCAAGCAGG 832
Query 1301 AAGCATTATTATGTAAACCACAAGAAGAAGCCAGGTTTAGCCCCAGAGTTTCCAGATACA 1360
|| ||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 833 AACCATTATTATGTGAACTACAAGAAGAAGCAAGGTTTAGCCCCAGAGTTTCCAGATACA 892
Query 1361 ACCCAAAACCCAAATCACCTTCAAAGAACGACGCTTCTTTACATGAGTTGAGACCAATAC 1420
||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 893 ACCCAAAACTCAAATCACCTTCGAAGAACGACACTTCTTTACATGAGTTGAGACCAATAC 952
Query 1421 ATATCCAAGAATCCATCTCCATGAACACCAACAGACAAATGTCTCC---AATAGACCAAG 1477
|||| ||||||||||||||||||||| |||||||||||| |||||| |||||| ||||
Sbjct 953 ATATTCAAGAATCCATCTCCATGAACTCCAACAGACAAAAGTCTCCTCCAATAGAACAAG 1012
Query 1478 AATCAGATGACAAGGAAAATGTTAACGGACAAAGCAGTGAAACTGGATTTGTGACCATGA 1537
||||| ||||||||||||||||| |||||||||||| | |||||||||||||||| ||||
Sbjct 1013 AATCATATGACAAGGAAAATGTTCACGGACAAAGCAATCAAACTGGATTTGTGACGATGA 1072
Query 1538 AAAAGGCTAGATTCAGAGAAGCAAGAGACCAATGTTCCCTGAAGAAACCAAATAGAGTAG 1597
||||||| || ||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1073 AAAAGGCAAGTTTCAGAGAAGCAAGAGACCAATGTTCCCTGAAGAAACCAAATACAGAAG 1132
Query 1598 TTCTCATGAAGTGTTCGAGTAGTAAAGAGTTAAAGA-ATATCGCTGGGGAGga-agacaa 1655
|||| ||||||||||||||||||||||||| |||| | | ||||||||||| | |||
Sbjct 1133 TTCTGGTGAAGTGTTCGAGTAGTAAAGAGTTGAAGACAAAA-GCTGGGGAGGATA-ACAC 1190
Query 1656 agaagaaagaaacaagaagagaaaagTTTTGGGGGAAATGTCTAATCACCAGTCCTCTGG 1715
|||||||||| | || ||||||| ||||||||| |||||||| ||||| | |||||| |
Sbjct 1191 AGAAGAAAGAGAGAAAAAGAGAAGAGTTTTGGGAGAAATGTCAAATCAACTGTCCTCCGT 1250
Query 1716 AGCTGAAGAGATCGCAGGAAAATGGCGTTGCCCGCAGAAGAACAAACGGAAGATAGTTCC 1775
||| |||||||||||||||||||||| |||||||| ||||||||| |||||||||||||
Sbjct 1251 TGCTAAAGAGATCGCAGGAAAATGGCGCTGCCCGCAAAAGAACAAAAGGAAGATAGTTCC 1310
Query 1776 ACCATTGAAGCAGCTTCGACTTGACGCATGGATACATAAAGTCTGA 1821
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1311 ACCATTGAAGCAGCTTCGACTTGACGCATGGATACACAAAGTCTGA 1356
> AT4G16810.1 | Symbols: | VEFS-Box of polycomb protein | chr4:9459870-9462253
REVERSE LENGTH=1105
Length=1105
Score = 494 bits (267), Expect = 2e-138
Identities = 330/360 (92%), Gaps = 6/360 (2%)
Strand=Plus/Plus
Query 19 ACAACAGAAGCTATGGTCCCTGCTAAGCGATCAAAGGCTAGAAGCCACTACTTAACTCTT 78
||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 19 ACAACAGAAGCTAAGGTCCCTGCTAAGCGATCAAAGGCTACAAGCCACTACTTGCCTCTT 78
Query 79 CCTAAACGCCAGTTCTATAATACGCGAACCGGCCAGCCACTGTCACTTGAGGAAGTTATG 138
| |||||||||||||||| || | |||||||| |||||| ||||||||||| ||||||||
Sbjct 79 CATAAACGCCAGTTCTATCATTCCCGAACCGGTCAGCCATTGTCACTTGAGCAAGTTATG 138
Query 139 TCTGACCGAGATAACGAAAATGATGTCGAC------GATGTTGCTGAACATCTCGCAGAA 192
||||||||||||| ||||||||| |||||| |||| ||||| |||||||| ||||
Sbjct 139 TCTGACCGAGATAGCGAAAATGACGTCGACAAAAATGATGATGCTGCACATCTCGAAGAA 198
Query 193 AGCCAGATGCCTAATGATTCCATGGATGAGAATGAAATCGTAGCAGAGAGATTCATACAC 252
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 199 AGCCAGATGCTTAATGGTTCCATGGATGAGAATGAAATCGTAGCAGAGAGATTCATAAAA 258
Query 253 CTTTGGAACTCCTTTGTTAAAAAGCAAAGGATTGTTGCAGATTATCATATTCCTTGGGCA 312
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 259 CTTTGGAACTCCTTTGTTAAACAGCAAAGGATTGTTGCAGATGCTCATATTCCTTGGGCA 318
Query 313 TGTGAAGCATTCTCAAGATTACACCTGCAAGAGTTGCGCAGTAACTTATCACTCGACTTG 372
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 319 TGTGAAGCATTCTCAAGATTACACCTGCAAGAGCTGCGCAGTAACTTATCACTCGACTTG 378
Score = 110 bits (59), Expect = 7e-23
Identities = 75/83 (90%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 447 AGAAGCGGTGGTCGTAGAGGTCGTGGTCGCCAAGGCCGAGGTGGTCGTGGTCGTGGTCGT 506
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 811 AGAAGCGGTGGTCGTAGAGGTCGTGGTCGCCGAGGCCGAGGTGGTCGTGGTCGTGAAGGC 870
Query 507 GGAAGCGGAAGCGGAAGCGGAAA 529
||||||| |||||| || |||||
Sbjct 871 GGAAGCGCAAGCGGTAGTGGAAA 893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90109978275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5