BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329840
Length=1614
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16730.1 | Symbols: TPS02 | terpene synthase 02 | chr4:94028... 2555 0.0
> AT4G16730.1 | Symbols: TPS02 | terpene synthase 02 | chr4:9402898-9406003
FORWARD LENGTH=1841
Length=1841
Score = 2555 bits (1383), Expect = 0.0
Identities = 1547/1625 (95%), Gaps = 16/1625 (1%)
Strand=Plus/Plus
Query 1 ATGGGATCATCAATATCTCCTCTCACTCGAG-A-ATATATATGT----GAAGCTGAAACC 54
|||||||||||||||||||||||| |||||| | |||||||||| |||| |||||||
Sbjct 222 ATGGGATCATCAATATCTCCTCTCGCTCGAGAATATATATATGTGAAAGAAGTTGAAACC 281
Query 55 GCGGAGAAAGCTAAATTGTTGAAAGAAGAGGTGAGGAAGACACTAGGTGAAATTGAAGGT 114
||||||||||||| |||||| ||||||||||||||||||||| || |||||||||||||
Sbjct 282 GCGGAGAAAGCTATATTGTTTAAAGAAGAGGTGAGGAAGACATTAAATGAAATTGAAGGT 341
Query 115 TCTATTGAGCAGCTGGAAATGATCGATTCTTTGCAAAGACTCGGAATCTCATATCACTAT 174
|||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 342 TCTATTGAGCAGCTAGAAATGATCGATTCTCTGCAAAGACTCGGAATCTCGTATCACTAT 401
Query 175 AAACACGAAATCCATGATATTTTGA-AAAACATTCATGACCAACGCGGCGAAATTGAGAG 233
||||| ||||||||||||||||||| |||| ||||||||||||| |||||||||||||||
Sbjct 402 AAACATGAAATCCATGATATTTTGAGAAAA-ATTCATGACCAACACGGCGAAATTGAGAG 460
Query 234 GGAATCACAAGATCTTCATGCTACATCACTTGAATTTTTTCTCCTAAGGCAACATGGTTT 293
|||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 461 GGAAACACAAGATCTTCATGCTACATCACTTGAATTTATTCTCTTAAGGCAACATGGTTT 520
Query 294 TGATGTCTCGCAAGATGTTTTTGACGTTTTCATAAGTGAGGCCGGGGTATTCAGAAAAAC 353
||||||||||||||||| |||||||||||||||||||||| |||| | ||||||||||||
Sbjct 521 TGATGTCTCGCAAGATGCTTTTGACGTTTTCATAAGTGAGACCGGAGAATTCAGAAAAAC 580
Query 354 TCTACGCAGCGATATCAAAGGGTTACTCTCTCTATACGAAGCTTCTTATTTTTCAAAGGG 413
| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 581 TTTACACAGCGATATCAAAGGTTTACTCTCTCTATACGAAGCTTCTTATTTTTCAATGGA 640
Query 414 TTCGGAGTTTAAACTCAAGGACACTAGAATTTATGCAAACAAGCGATTAAGTGAGTTTGT 473
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 641 TTCGGAGTTTAAACTCAAGGAGACTAGAATTTATGCAAACAAGCGGTTAAGTGAGTTTGT 700
Query 474 CGCGGAAAGTAGCAAAACTATTTGCAGAGAAGATGAAACTTATATATTTGAGATGGTGAA 533
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 701 CGCGGAAAGTAGCAAAACTATTTGCAGAGAAGATGAAACTTATATATTAGAGATGGTGAA 760
Query 534 ACGAGCACTAGATACGCCGTACCATTGGAGCATACGAAGATTAGAAGCAAGATGGTACAT 593
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 ACGAGCACTAGAGACGCCGTACCATTGGAGCATACGAAGATTAGAAGCAAGATGGTACAT 820
Query 594 AAATGTGTACGAACACAAGCATGAAATGAACCCTCTCTTGTTTGAGTTTGCAGCAACTGA 653
||||||||||||| | |||||||||||||||||||||||| | ||||||||||||| |||
Sbjct 821 AAATGTGTACGAAAAAAAGCATGAAATGAACCCTCTCTTGCTAGAGTTTGCAGCAATTGA 880
Query 654 TTTCAACATGTTACAAGCTAATCATCAAGAAGAACTTAAAC-TAGTTTCTAGTTGGTGGA 712
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 881 TTTCAACATGTTACAAGCTAATCATCAAGAAGAACTTAAACTTA-TTTCTAGTTGGTGGA 939
Query 713 ACAGCACAGGACTTATGAAACAACTTGATTTCGTGAGAGACCGAATCACAGAGAGTTATT 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 ACAGCACAGGACTTATGAAACAACTTGATTTCGTGAGAGACCGAATCACAGAGAGTTATT 999
Query 773 TTTGGACCATTGGAATATTTTACGAGCCAGAGTTTAAATACTGCCG-AATGATACTCACC 831
||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 1000 TTTGGACCATTGGAATATTTTACGAACCAGAGTTTAAATACTGCCGCAA-GATACTCACC 1058
Query 832 AAAATATTCATGTTAATTGCGATTATGGATGATATCTACGATATCTATGGTACATTAGAG 891
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1059 AAAATATTCATGTTAATTGTGATTATGGATGATATCTACGACATCTATGGTACATTAGAG 1118
Query 892 GAGCTCGAGATTTTCACAAATGTTGTCGAAAAATGGGATGTGAACCATGTTGAAAGACTT 951
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1119 GAGCTCGAGCTTTTCACAAATGTGGTCGAAAAATGGGATGTGAACCATGTTGAAAGACTT 1178
Query 952 CCCAACTACATGAGAATTTGTTTTCTTTTTCTATACAATGAGATCAACCAAATAGGATAC 1011
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 CCCAACTACATGAGAATGTGTTTTCTTTTTCTATACAATGAGATCAACCAAATAGGATAC 1238
Query 1012 GATGTTCTGAGAGACAAAGGACTTAACGTTATCCCTTACCTCAAACAAGTTTGGACGGAT 1071
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 GATGTTCTCAGAGACAAAGGACTTAACGTTATCCCTTACCTCAAACAAGTTTGGACGGAT 1298
Query 1072 CTATTTAAAACGTTCCTGA-TGGAAGCAAAGTGGTACAAAACTGAACACAGACCAAGTTT 1130
||||||||||||||||| | || || | |||||||||||||||| ||||| |||||||||
Sbjct 1299 CTATTTAAAACGTTCCTAACTG-AATCCAAGTGGTACAAAACTGGACACAAACCAAGTTT 1357
Query 1131 CGAAGAATATATGCAAAACGGTGTGATCTCGAGTTCTGTCCCAACGATACTGCTCCACCT 1190
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 CGAAGAATACATGCAAAACGGTGTGATCTCGAGTTCTGTCCCAACGATACTGCTCCACCT 1417
Query 1191 TTTCTCCGTCCTACCCGACCACATCTCCGACCAAACCCTAACCGATGTTTCCAAAAACCA 1250
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1418 TTTCTCCGTCCTATCCGACCACATCTCCGACCAAACCCTAACCGATGATTCCAAAAACCA 1477
Query 1251 CTCTGTCGTCCGGAGCTGTGCCACCATTCTCCGTCTCGCTAATGATCTCGCCACCTCAAC 1310
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1478 CTCTGTCGTCCGGAGCTGTGCCACCATTCTCCGTCTCGCTAATGATCTTGCCACCTCAAC 1537
Query 1311 GGATGAGATGGCAAGAGGAGATTCCCCAAAGTCAGTCCAATGTTACATGTATGAGACAAG 1370
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1538 GGAGGAGATGGCAAGAGGAGATTCCCCAAAGTCGGTCCAATGTTACATGTATGAGACAAG 1597
Query 1371 AGCCAGTGAGGAAGAGGCACGGGGACACATGCAAAGTATGATCAGCGACTCTTGGGACGT 1430
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1598 AGCAAGTGAGGAAGAGGCACGTAGACACATGCAAAGTATGATCAGCGACTCTTGGGACAT 1657
Query 1431 CATAAACTCCGATTTTAAAACGGAACACACTTCTTCTCTTCCTCGTGGTTT-CGTGGCAG 1489
|||||||||||||| ||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct 1658 TATAAACTCCGATTTAAAAACGGCACACACTTCTTCTCTTCCTCGTGGTTTTC-TGGCAG 1716
Query 1490 CCGCCGCAAATCTTAACCGCGTGGTACAGTGTATCTACCAGCACGGTGATGGCCACGGCA 1549
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1717 CCGCCGCAAATCTTAACCGCGTGGTACAGTGTATCTACCGGCACGGTGATGGCCACGGAA 1776
Query 1550 GCCCCGAAAAGACCAAGACCGTTGATTATATCCAATCCGTACTCTTCAATCCCGTTCCGT 1609
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1777 GCCCAGAAAAGACCAAGACCGTTGATTATATCCAATCAGTACTCTTCAATCCCGTTCCGT 1836
Query 1610 TATAG 1614
|||||
Sbjct 1837 TATAG 1841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79718465460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5