BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329848
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16620.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 1685 0.0
> AT4G16620.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr4:9358117-9360060 REVERSE LENGTH=1337
Length=1337
Score = 1685 bits (912), Expect = 0.0
Identities = 1026/1082 (95%), Gaps = 4/1082 (0%)
Strand=Plus/Plus
Query 1 ATGATGAAGAGAGAGACGTTAAAAGAAGTAGGAATAATCGGAGGATTAGCCGGAGCTCAG 60
|||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||
Sbjct 190 ATGATGAAGAGAGAGACGTTAATAGAAGCAGGAATAATCGGAGGATTGGCCGGAGCTCAG 249
Query 61 GTGATCTACGCCGGAAACTCGGAGCTACTGAGTCAGTTGTTGTCTCTTGGAATTGACCCT 120
||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 250 GTGATTTACGCCGGAAACTCGGAGCTACTGAGTCAGTTGCTGTCTCTCGGAATTGACCCA 309
Query 121 CTTCTTATTGTAATCCTCTGCACCTTTGCATCATTTCTTCTCATCACTCCCT-TTGCTTT 179
|||||||| || ||| | ||||||||||||||| ||||||||||||| |||| | |||||
Sbjct 310 CTTCTTATCGTTATCTTATGCACCTTTGCATCAGTTCTTCTCATCAC-CCCTCTCGCTTT 368
Query 180 TCTCCTTGAAAGGAAGCTTTGGCCTACAAGTCTAAGTTTCAAGTTGAAGATAAAACTGGT 239
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 369 TCTCCTTGAAAGGAAGCTTTGGCCTAGAAGTCTAAGTTTCAAGTTGAAGATAAAACTAGT 428
Query 240 TTTGGTTGCTCTTGCTGGAGTGTCTCTGTTCCAGTGGTTATACTTAGAAGGAATGAAACA 299
|||||||||||||||||||||| ||||||||||| |||||| ||| ||||||||||||||
Sbjct 429 TTTGGTTGCTCTTGCTGGAGTGACTCTGTTCCAGGGGTTATTCTTGGAAGGAATGAAACA 488
Query 300 TACCTCTGCATCAATGGCTACAGCTATGCCTAATCTCTGTCCTGCTTTCATTTTTGTCAT 359
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 489 CACCTCTGCTTCAATGGCTACAGCTATGCCTAATCTCTGCCCTGCTTTCATTTTTGTCAT 548
Query 360 TGCGTAGGCTGCTGGGATGGAGAAAGTGAAGCTAAGTTGTATGTACAGTAGAGTTAAGAT 419
||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 549 TGCTTGGGCTGCTGGGATGGAGAAAGTGAAGCTAAGTTGTATGTATAGTAGAGTTAAGAT 608
Query 420 GGGTGGGACAGTGTTATGTGTGATGGGAGCAT-TCATTATGAGCTTAATGCATAGTACTA 478
||| ||||||||||| |||||||||||||| | ||||||||||||||||||| |||||||
Sbjct 609 GGGAGGGACAGTGTTGTGTGTGATGGGAGC-TCTCATTATGAGCTTAATGCACAGTACTA 667
Query 479 CCGCCACTTCGAGCTCGGTCAAGACTATGCCTATTGTCCCTGACGAAGTCGTTGTGGACA 538
|||| |||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 668 CCGCTACTTTAAGCTCGGTTAAGACTATACCTATTGTCCCTGACGAAGTCGTTGTGGACA 727
Query 539 AGGACAAGATCTTAGGTTGTCTCTGTCTCCTCCTCGCCATCTGCGGCTTGTCCTCTAGTA 598
||||||||||||||||||| |||| ||||||||| ||||| |||||||||||||||||||
Sbjct 728 AGGACAAGATCTTAGGTTGCCTCTATCTCCTCCTTGCCATTTGCGGCTTGTCCTCTAGTA 787
Query 599 TTGTCCTTCAGGCATCCATACTAGCCGAGTTTCCGGCGCCTATATCAATGTTCTCGATGG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 TTGTCCTTCAGGCATCCATACTAGCCGAGTTTCCGGCGCCTATATCAATGTTCTCGATGG 847
Query 659 TATCTTTGATGGGTGGGATCACCACGGTAGCTTTGCAGTATGCTCTTAAGGGTAGTATGG 718
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 848 TATCTTTGATGGGTGGGATCACCACAGTAGCTTTGCAGTATGCTCTTAAGGGAAGTATGG 907
Query 719 AGATGGGTAGTGCATCAGTAATCGGTCTCGGTCACCTTGTGGGATACGCAATACTGGGAG 778
| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 908 AAATGGGAAGTGCATCAGTAATCGGTCTCGGCCACCTTGTGGGATACGCAATACTGGGAG 967
Query 779 GGTTGGTGAGTGGAGGAGGGTTAAGTTTCAACGCATGGGTGATTAAGAGGAAAGGACCCG 838
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 968 GGTTGGTGAGTGGAGGAGGGTTAAGCTTCAATGCATGGGTGATTAAGAGGAAAGGACCAG 1027
Query 839 TGATTGTGTCTCTCTTTAGTCCAATTGCTACTGTGGTTTGTGTTCTTGTCTCTGCTTTTA 898
|||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||
Sbjct 1028 TGATTGTGTCTCTCTTTAGTCCAATTGCAACTGTGGTATGTGTTGTTGTCTCTGCTTTTA 1087
Query 899 CCATGGAAGAGAGTTTCAACCTAGGAAGCTTTGCGGGAATGGCGTTGATGTTCGGAGGAC 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 CCATGGAAGAGAGTTTCAACCTAGGAAGCTTTGCGGGAATGGCGTTGATGTTCGGAGGAC 1147
Query 959 TCTACTTCGTTCTGTGGGCTAAAGGGAAAGAGGATTGTGAAGAAATAGATGAAACAAAAC 1018
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1148 TCTACTTCGTTCTGTGGGCTAAAGGAAAAGAGGATTGTGAAGAAATAGATGAAATGAAAC 1207
Query 1019 AAGATGATGAAGAAAGTTTGCTTAGAACAGAGTTTGATCTTGAGAAGCCTCTCTTGCTTT 1078
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1208 AAGATGATGAAGAAAGTTTGCTTAGAACAGAGTTTGATCTTCAGAAGCCTCTCTTGCTTT 1267
Query 1079 AG 1080
||
Sbjct 1268 AG 1269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52911374430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5