BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329850
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16600.1 | Symbols: | Nucleotide-diphospho-sugar transferas... 1216 0.0
> AT4G16600.1 | Symbols: | Nucleotide-diphospho-sugar transferases
superfamily protein | chr4:9350039-9352707 FORWARD LENGTH=1485
Length=1485
Score = 1216 bits (658), Expect = 0.0
Identities = 755/801 (94%), Gaps = 10/801 (1%)
Strand=Plus/Plus
Query 1 ATGGATTGT-CAGAGAACTATAG-TGTTCTCTTGTTGGGTTCTGTTTCTTTTAATCATCG 58
||||||| | || |||||| | | ||||||||||||||||||||| |||||| ||||||
Sbjct 1 ATGGATT-TACAAAGAACT-TTGATGTTCTCTTGTTGGGTTCTGTCTCTTTTGATCATCA 58
Query 59 AAACGACAGCGTATAACGAGAAACAGCTGTTCCAGCCGTTTGAAACGGAAAACGCAAACG 118
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 59 AAACGACAGCGTATAACGAGAAACAGCTGTTCCAGCCGCTTGAAACGGAAAACGCAAACG 118
Query 119 CGTTGACCGCGGTTATGGAGCGAGGATTAAAGACGCA---GCGGCCGGAGCACAGGAACG 175
|| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 119 CGATGACCGCGGTTATGGAGCGAGGATTAAAGACGCAGCGGCGGCCGGAGCACAAGAACG 178
Query 176 CTTATGCGACGATGATGTACATGGGAACACCAAGAGACTACGAGTTCTACGTTGCTACTC 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 179 CTTATGCGACGATGATGTACATGGGAACACCAAGAGACTACGAGTTCTACGTTGCGACAC 238
Query 236 GTGTTTTGATCAGATCGCTTAAGGGTCTTCACGTGGACGCTGATATCGTCGTCATCGCCT 295
|||| |||||||||||||||||| |||| ||||||||||||||||||||||| || ||||
Sbjct 239 GTGTCTTGATCAGATCGCTTAAGAGTCTCCACGTGGACGCTGATATCGTCGTTATAGCCT 298
Query 296 CTCTCGACGTTCCGATCAACTGGATTCACGCTTTGGAAGAAGAGGACGGAGCTAAAGTAG 355
| ||||||||||| |||||||||||||||||| |||||||||| || |||||||||||||
Sbjct 299 CCCTCGACGTTCCTATCAACTGGATTCACGCTCTGGAAGAAGAAGATGGAGCTAAAGTAG 358
Query 356 TGAGAGTAGAGAATCTTGAGAATCCGTACAAGAAACAAACCAACTTCGACAACAGATTCA 415
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 359 TGAGAGTAGAGAATCTTGAGAATCCATACAAGAAACAAACCAACTTCGACAACAGATTCA 418
Query 416 AGCTTAGTCTAAACAAGCTCTACGCTTGGTCTCTCTCTGATTATGACCGTGTCGTAATGC 475
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 419 AGCTTAGTCTAAACAAGCTCTACGCTTGGTCTCTCTCTGATTATGACCGTGTTGTAATGC 478
Query 476 TCGACGTCGACAATCTCTTCCTCAAAAACACGGACGAGCTCTTCCAGTGTGGCCAATTCT 535
| || |||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |
Sbjct 479 TTGATGTCGACAATCTCTTTCTCAAGAACACCGACGAGCTCTTCCAGTGTGGCCAATTTT 538
Query 536 GTGCTGTCTTCATTAACCCTTGCATCTTCCACACTGGTCTCTTTGTGTTGCAGCCATCAA 595
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GTGCTGTCTTCATCAACCCTTGCATCTTCCACACTGGTCTCTTTGTGTTGCAGCCATCAA 598
Query 596 TGGAGGTCTTTAGAGACATGATTCATGAGCTTGAAGTAAAGAGAGATAACTCTGATGGAG 655
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 599 TGGAGGTCTTTAGAGACATGCTTCATGAGCTTGAAGTAAAGAGAGATAACCCTGATGGAG 658
Query 656 CTGATCAAGGCTTTCTTGTCAGCTACTTCTCTGATTTACTCAATCAGCCTCTCTTTCGTC 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CTGATCAAGGCTTTCTTGTCAGCTACTTCTCTGATTTACTCAATCAGCCTCTCTTTCGTC 718
Query 716 CTCCTTCCGATAACCTTACCACCGCACTTACTGGACATTTTAGGCTTCCTTTGGGATATC 775
||||| ||||||||| | ||||| |||| ||||||||||||||||||||||||||||
Sbjct 719 CTCCTCCCGATAACCG--C-ACCGCGCTTAAGGGACATTTTAGGCTTCCTTTGGGATATC 775
Query 776 AAATGGACGCATCTTATTACT 796
|||||||||||||||||||||
Sbjct 776 AAATGGACGCATCTTATTACT 796
Score = 833 bits (451), Expect = 0.0
Identities = 512/542 (94%), Gaps = 2/542 (0%)
Strand=Plus/Plus
Query 801 TTATTCCA-CAGAGATGCCTTGGGTTATAATCCAAGCAGTGTTCTATCTAGGGATCATAC 859
||||| || |||||||||||||||| ||| ||||||||||||||| ||||| || ||||
Sbjct 945 TTATT-CAGCAGAGATGCCTTGGGTCCTAACCCAAGCAGTGTTCTACCTAGGAATTATAC 1003
Query 860 TAGTCACACGCCTAGCGCGTCCCAACATGACCAAGCTATGTTATCGACGTTCTGATAAGA 919
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1004 TAGTCACACGTCTAGCGCGTCCCAACATGACCAAGCTATGTTACCGACGTTCTGATAAGA 1063
Query 920 ATCTAAGCATGATCCAGACAACTTTCAAGGTTGTTGCACTCCTCTTGATCCTCTCAGCCT 979
|||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||
Sbjct 1064 ATCTAAGCATGATCCAGACAGCTTTCAAGTTTGTTGCACTCCTCTTTATCCTCTCAGCCT 1123
Query 980 ACATTATACCATTCTTCATCATCCCACAGACGATCCACCCGCTCATCGGTTGGTCTCTCT 1039
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1124 ACATTATACCATTCTTCATCATCCCACAGACGATCCACCCGCTCATTGGTTGGTCTCTCT 1183
Query 1040 ACTTAACCGGCTCCTTTGTTCTCTCTACCATACCCATCAATGCCTTCTTGCTTCCAATGC 1099
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||| || |
Sbjct 1184 ACTTAACCGGCTCCTTTGCTCTCTCTACCATACCCATCAACGCCTTCTTGCTTCCCATTC 1243
Query 1100 TCCCCGTCATAACACCGTTGATTGGCATTTTCGGAACGCTCCTAGTGATGGCTTTTCCTT 1159
|||| ||||||||||||| | ||||||||||||| || ||||| ||||||||||||||||
Sbjct 1244 TCCCTGTCATAACACCGTGGCTTGGCATTTTCGGGACACTCCTCGTGATGGCTTTTCCTT 1303
Query 1160 CTTATCCTGATGGCGTTGTCAGAGCATTGTCCGTTTTCGGGTATGCATTTTGTTGTGCAC 1219
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1304 CTTATCCTGATGGCGTTGTTAGAGCATTGTCGGTTTTCGGGTATGCATTTTGTTGTGCAC 1363
Query 1220 CGTTTCTATGGGTCTCCTTTGTGAAGATCACATCACATCTTCAGGTTATGATTGACAAAG 1279
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1364 CGTTTCTATGGGTCTCCTTTGTGAAGATCACATCGCATCTTCAGATTATGATTGACAAAG 1423
Query 1280 AGGTTTTGTTTCCGCGGTTGGGTGAATCAGGAGTCACTTCTTGTCTCAGCAAATTGTACT 1339
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1424 AGGTTTTGTTTCCGCGGTTGGGTGAATCCGGAGTCACTTCTGGTCTCAGCAAATTGTACT 1483
Query 1340 GA 1341
||
Sbjct 1484 GA 1485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66013716675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5