BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg329873 Length=579 Score E Sequences producing significant alignments: (Bits) Value AT4G16400.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 470 8e-132 > AT4G16400.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9260564-9262670 FORWARD LENGTH=1225 Length=1225 Score = 470 bits (254), Expect = 8e-132 Identities = 302/324 (93%), Gaps = 8/324 (2%) Strand=Plus/Plus Query 251 GTTTTTGGCTTCAACATCTTCTCC-TTAAT-T-CTCTCTCTGTTCACCGAGTTCAATCAC 307 |||||||| ||||||||| ||||| || | | |||||||| || ||| ||||||||||| Sbjct 300 GTTTTTGGATTCAACATC-TCTCCATTTCTCTCCTCTCTCTCTT-ACCAAGTTCAATCAC 357 Query 308 AA-GTAATGGAGATCCAGGCAAGGCTAATGGAATACAGATTCCATTTCATGGTAG-CAAT 365 || | ||||||||||||||||| ||| |||||||||||||||||||||||||| | |||| Sbjct 358 AAGGAAATGGAGATCCAGGCAAAGCTCATGGAATACAGATTCCATTTCATGGT-GACAAT 416 Query 366 CATGGTGAGCGTGGTTGTGGCGTCTCTCGTGTATGCAGCACCAAGGATTGTGAACATTTT 425 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 417 CATGGTGAGCGTGATTGTGGCGTCTCTCGTGTATGCAGCACCAAGGATTCTGAACATTTT 476 Query 426 AGCTTATTTCTGGCCTCTGTTTGCGTCAACGGCCGCCTTCTTAGCGGTGGCAATCACCTT 485 ||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 477 AGCCTATTTCTGGCCTCTGTTTGCGTCAACAGCCGCCTTCTTAGCGATGGCAATCACCTT 536 Query 486 CGGTGGCTTTCAACAGCTTTCAGAAGAAGCCACCGGCGAGAGACTGATGGATTACGTCGC 545 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 TGGTGGCTTTCAACAGCTTTCAGAAGAAGCCACCGGCGAGAGACTGATGGATTACGTCGC 596 Query 546 CGGACGGCCTGAGGATTCTCACAA 569 |||||||||||||||||||||||| Sbjct 597 CGGACGGCCTGAGGATTCTCACAA 620 Score = 363 bits (196), Expect = 1e-99 Identities = 234/252 (93%), Gaps = 3/252 (1%) Strand=Plus/Plus Query 1 ATGGGAAACTGCATTCACACATTGCTCCGCAAGCATGGAAACAAAGTTACAGATGTCTGG 60 |||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||| Sbjct 1 ATGGGAAACTGCATTCACACGTTGCTCTGCAAGCATGGAAACAAGGTTACAGATGTCTGG 60 Query 61 TCGGATGATGAAGCATCAACAGAGACGGCCAAGGAGTCACCTCAGGATGCAACTGAG-AG 119 ||||||||||| ||||||||||||| | |||||||||||||||||||||| ||||| || Sbjct 61 TCGGATGATGAGGCATCAACAGAGAAGATCAAGGAGTCACCTCAGGATGCAGCTGAGCAG 120 Query 120 --CAAAACTGGGAGAAGGCGGTGCATAAAGATCACTCTGACAAGGAAACAGCTCGAGCTG 177 ||||| |||| ||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 121 AAGAAAACAGGGACAAGGCGGTGCATAAAGATCACTCTGACTAGGAAACAGCTCGAGCAG 180 Query 178 CTGCTGCGACAAAATCCTCAAGGCGTTTCGTTTCAGCGGAAATGGAAGCCATCTTTGCAG 237 ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 181 CTGCTGCAACAAAATCCTCAAGGCGTTTCATTTCAGCGGAAATGGAAGCCATCTTTGCAG 240 Query 238 ACAATAGTAGAG 249 |||||||||||| Sbjct 241 ACAATAGTAGAG 252 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27829717438 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5