BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg329873

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G16400.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   470    8e-132


> AT4G16400.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G13175.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr4:9260564-9262670 FORWARD LENGTH=1225
Length=1225

 Score =  470 bits (254),  Expect = 8e-132
 Identities = 302/324 (93%), Gaps = 8/324 (2%)
 Strand=Plus/Plus

Query  251  GTTTTTGGCTTCAACATCTTCTCC-TTAAT-T-CTCTCTCTGTTCACCGAGTTCAATCAC  307
            |||||||| ||||||||| ||||| ||  | | |||||||| || ||| |||||||||||
Sbjct  300  GTTTTTGGATTCAACATC-TCTCCATTTCTCTCCTCTCTCTCTT-ACCAAGTTCAATCAC  357

Query  308  AA-GTAATGGAGATCCAGGCAAGGCTAATGGAATACAGATTCCATTTCATGGTAG-CAAT  365
            || | ||||||||||||||||| ||| |||||||||||||||||||||||||| | ||||
Sbjct  358  AAGGAAATGGAGATCCAGGCAAAGCTCATGGAATACAGATTCCATTTCATGGT-GACAAT  416

Query  366  CATGGTGAGCGTGGTTGTGGCGTCTCTCGTGTATGCAGCACCAAGGATTGTGAACATTTT  425
            ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  417  CATGGTGAGCGTGATTGTGGCGTCTCTCGTGTATGCAGCACCAAGGATTCTGAACATTTT  476

Query  426  AGCTTATTTCTGGCCTCTGTTTGCGTCAACGGCCGCCTTCTTAGCGGTGGCAATCACCTT  485
            ||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct  477  AGCCTATTTCTGGCCTCTGTTTGCGTCAACAGCCGCCTTCTTAGCGATGGCAATCACCTT  536

Query  486  CGGTGGCTTTCAACAGCTTTCAGAAGAAGCCACCGGCGAGAGACTGATGGATTACGTCGC  545
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  537  TGGTGGCTTTCAACAGCTTTCAGAAGAAGCCACCGGCGAGAGACTGATGGATTACGTCGC  596

Query  546  CGGACGGCCTGAGGATTCTCACAA  569
            ||||||||||||||||||||||||
Sbjct  597  CGGACGGCCTGAGGATTCTCACAA  620


 Score =  363 bits (196),  Expect = 1e-99
 Identities = 234/252 (93%), Gaps = 3/252 (1%)
 Strand=Plus/Plus

Query  1    ATGGGAAACTGCATTCACACATTGCTCCGCAAGCATGGAAACAAAGTTACAGATGTCTGG  60
            |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||
Sbjct  1    ATGGGAAACTGCATTCACACGTTGCTCTGCAAGCATGGAAACAAGGTTACAGATGTCTGG  60

Query  61   TCGGATGATGAAGCATCAACAGAGACGGCCAAGGAGTCACCTCAGGATGCAACTGAG-AG  119
            ||||||||||| ||||||||||||| |  |||||||||||||||||||||| ||||| ||
Sbjct  61   TCGGATGATGAGGCATCAACAGAGAAGATCAAGGAGTCACCTCAGGATGCAGCTGAGCAG  120

Query  120  --CAAAACTGGGAGAAGGCGGTGCATAAAGATCACTCTGACAAGGAAACAGCTCGAGCTG  177
               ||||| |||| ||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct  121  AAGAAAACAGGGACAAGGCGGTGCATAAAGATCACTCTGACTAGGAAACAGCTCGAGCAG  180

Query  178  CTGCTGCGACAAAATCCTCAAGGCGTTTCGTTTCAGCGGAAATGGAAGCCATCTTTGCAG  237
            ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  181  CTGCTGCAACAAAATCCTCAAGGCGTTTCATTTCAGCGGAAATGGAAGCCATCTTTGCAG  240

Query  238  ACAATAGTAGAG  249
            ||||||||||||
Sbjct  241  ACAATAGTAGAG  252



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27829717438


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5