BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329886
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16260.1 | Symbols: | Glycosyl hydrolase superfamily protei... 1620 0.0
> AT4G16260.1 | Symbols: | Glycosyl hydrolase superfamily protein
| chr4:9200010-9201552 REVERSE LENGTH=1316
Length=1316
Score = 1620 bits (877), Expect = 0.0
Identities = 984/1036 (95%), Gaps = 5/1036 (0%)
Strand=Plus/Plus
Query 1 ATGACCCCATTATTTATCCTTATTGCTCT-TT--TCACAACCATCCTCAATCCAACAAGT 57
|||||| | ||||| ||||||||||||| || |||||||||||||||| |||||||||
Sbjct 112 ATGACCACGTTATTCCTCCTTATTGCTCTATTCATCACAACCATCCTCAACCCAACAAGT 171
Query 58 GGAGAACCAGTAGGTGTATGCTATGGAATGATGGGAAACAACCTTCCTTCTCAATCAGAC 117
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 172 GGAGAATCAGTAGGTGTATGCTATGGAATGATGGGGAACAACCTTCCTTCTCAATCAGAC 231
Query 118 ACAATCGCTCTCTTCAGACAAAACAACATCCGGCGTGTTAGACTCTACGACCCAAACCAA 177
|||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 232 ACAATCGCTCTCTTTAGACAAAACAACATCCGACGTGTTAGACTCTACGATCCAAACCAA 291
Query 178 GCCGCTTTAAACGCTCTTAAAAACACCGGTATCGAAGTCATCATCGGCGTTCCAAACTCC 237
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||
Sbjct 292 GCCGCTTTAAACGCTCTTAGAAACACGGGTATCGAAGTCATCATCGGCGTTCCAAACACC 351
Query 238 GAGCTTCGTTCACTCACTAACCCTTCTTCCGCCAGATCATGGCTCCAAAACAACGTCCTT 297
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 352 GATCTTCGTTCACTCACTAACCCTTCTTCCGCTAGATCATGGCTCCAAAACAACGTCCTC 411
Query 298 AACTATTACCCTGCCGTTAGCTTCAAGTACATCGCCGTCGGTAACGAAGTATCTCCATCG 357
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 412 AACTATTACCCCGCCGTTAGCTTCAAGTACATCGCCGTAGGTAACGAAGTATCTCCGTCG 471
Query 358 AACGGCGGCGATGTTGTGCTCCCTGCCATGCGTAATGTTTACGATGCTCTAAGAGGTGCA 417
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 472 AACGGCGGTGATGTTGTGCTCCCTGCCATGCGTAACGTTTACGATGCTCTAAGAGGTGCA 531
Query 418 AATCTTCAAGATCGTATTAAAGTTTCTACCGCCATTGATATGACTTTGATTGGAAACTCT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 AATCTTCAAGATCGTATTAAAGTTTCTACCGCCATTGATATGACTTTGATTGGAAACTCT 591
Query 478 TTCCCTCCTTCCTCCGGAGAGTTTCGAGGTGACGTTA-AGTGGTATATCGATCCCATCAT 536
|||||||||||||||||||||||||| |||||||||| | ||||||||||||||| ||||
Sbjct 592 TTCCCTCCTTCCTCCGGAGAGTTTCGTGGTGACGTTAGA-TGGTATATCGATCCCGTCAT 650
Query 537 CGGGTTTCTTACGAGTACCAACTCAGCGTTACTAGCCAACATCTATCCTTACTTCAGCTA 596
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 651 CGGGTTTCTTACGAGTACGAACTCAGCGTTACTAGCCAACATCTATCCTTACTTCAGCTA 710
Query 597 CGTCGACAATCCACGAGACATATCTCTCTCTTACGCTCTCTTCACTTCTCCTTCTGTCGT 656
||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 711 CGTTGACAATCCACGTGACATATCTCTCTCTTACGCTCTCTTCACTTCTCCTTCCGTCGT 770
Query 657 CGTCTGGGATGGCTCTCGCGGCTACCAAAACCTCTTCGACGCCTTGCTTGACGTTATTTA 716
||| ||||| |||||||| ||||||||||||||||| ||||| || ||||||||| ||||
Sbjct 771 CGTATGGGACGGCTCTCGTGGCTACCAAAACCTCTTTGACGCTTTACTTGACGTTGTTTA 830
Query 717 CTCCGCCGTCGAACGATCAGGTGGAGGATCTCTCCCAGTGGTTGTTTCCGAGAGCGGATG 776
||| ||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 831 CTCTGCCGTTGAACGCTCAGGCGGTGGATCTCTCCCAGTGGTTGTTTCCGAGAGCGGATG 890
Query 777 GCCTTCTAACGGTGGAAACGCGGCGAGTTTCGATAACGCTCGAGCGTATTACACGAATCT 836
||||||||||||||||||||| ||||||||||||||||| ||||| | ||||||||||||
Sbjct 891 GCCTTCTAACGGTGGAAACGCCGCGAGTTTCGATAACGCGCGAGCTTTTTACACGAATCT 950
Query 837 TGCGTCGCGTGTGAGAGAGAACAGAGGAACACCGAAGAGACCTGGAAGAGGAGTGGAAAC 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 TGCGTCGCGTGTGAGAGAGAACAGAGGAACACCGAAGAGACCTGGAAGAGGAGTGGAAAC 1010
Query 897 GTATTTGTTCGCTATGTTTGATGAGAATCAGAAGAGTCCTGAGATTGAGAAGAATTTTGG 956
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1011 GTATTTGTTCGCTATGTTTGATGAGAATCAAAAGAGTCCTGAGATCGAGAAGAATTTTGG 1070
Query 957 TTTGTTTTTTCCTAATAAACAACCAAAATTTCCGATCACATTCTCCGCCGCGAGAGAGGG 1016
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1071 TTTGTTTTTTCCTAATAAACAACCAAAATTTCCGATCACATTCTCTGCCGCGAGAGACGG 1130
Query 1017 TACGGCGGTTGAGTGA 1032
||||||||||||||||
Sbjct 1131 TACGGCGGTTGAGTGA 1146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50585786029
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5