BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg329901

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G16141.1 | Symbols:  | GATA type zinc finger transcription f...   468    3e-131


> AT4G16141.1 | Symbols:  | GATA type zinc finger transcription 
factor family protein | chr4:9131650-9133156 REVERSE LENGTH=998
Length=998

 Score =  468 bits (253),  Expect = 3e-131
 Identities = 307/334 (92%), Gaps = 0/334 (0%)
 Strand=Plus/Plus

Query  1    ATGTCAATGACGGAAGAGACTAAGACGACGAAGCTCGAATCGGCGGGAGATTCGTCCGAT  60
            ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct  183  ATGTCAATGACGGAAGAAACCAAGACGACGAAGCTCGAATCGGCGGGAGATTCGTCCGAT  242

Query  61   GTAGACAACGGGAACTGTAGTAGCAGTGGAAGTGGAGGTGATACGAAGAAGACATGCGTT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  243  GTAGACAACGGGAACTGTAGTAGCAGTGGAAGTGGAGGTGATACGAAGAAGACATGCGTT  302

Query  121  GATTGTGGAACAAGCAGGACTCCTCTTTGGCGTGGTGGACCTGCTGGACCTAAATCATTG  180
            ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  303  GATTGCGGAACAAGCAGGACTCCTCTTTGGCGTGGTGGACCTGCTGGCCCTAAATCATTG  362

Query  181  TGCAATGCGTGTGGGATCAAGAGCAGAAAGAAGAGACAAGCAGCTCTTGGAATTAGACAA  240
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  363  TGCAATGCGTGTGGTATCAAGAGCAGAAAGAAGAGACAAGCAGCTCTTGGAATTAGACAA  422

Query  241  GATGATAATAAGCTCAAGAACAAAAGTAACAACAATCTCAATTTTGAAAATCGAACTGTC  300
            ||||||| |||  |||||| ||||||||| ||||||||   | |||| |  |||| ||||
Sbjct  423  GATGATATTAAAATCAAGAGCAAAAGTAATAACAATCTTGGTCTTGAGAGCCGAAATGTC  482

Query  301  AAGATTGCTAAAGGTGAACAAGGAAATGTCAAGA  334
            ||||  |  ||||| |||| ||  ||||| ||||
Sbjct  483  AAGACCGGAAAAGGCGAACCAGTTAATGTTAAGA  516


 Score =  361 bits (195),  Expect = 5e-99
 Identities = 227/242 (94%), Gaps = 3/242 (1%)
 Strand=Plus/Plus

Query  293  GAACTGTCAAGATTGCTAAAGGTGAACAAGGAAATGTCAAGAACAAGATCAAGACAGATC  352
            ||| |||||||||||| |||||||||| |||||||||||||||||| ||||||| |||||
Sbjct  535  GAATTGTCAAGATTGCCAAAGGTGAACCAGGAAATGTCAAGAACAAAATCAAGAGAGATC  594

Query  353  ATGAGAATTTCAGTAGCAGTAATAATAAC---AAGAATGTGAAAAGGGTTGGTAGATTTT  409
             |||||||| ||||||||| |||||||||   ||||| ||||||||||||||||||||||
Sbjct  595  CTGAGAATTCCAGTAGCAGCAATAATAACAAGAAGAACGTGAAAAGGGTTGGTAGATTTT  654

Query  410  TGGATTTTGGGTTTAAAGTTCCGGCGATGAAGAGATCGGCGGTGGAGAAGAAGAGGCTAT  469
            |||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct  655  TGGATTTTGGGTTTAAGGTACCGGCGATGAAGAGATCGGCTGTGGAGAAGAAGAGGCTAT  714

Query  470  GGAGGAAACTTGGGGAAGAGGAACGAGCCGCAGTACTTCTCATGGCTCTTTCTTGTGGTT  529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  715  GGAGGAAACTTGGGGAAGAGGAACGAGCCGCAGTACTTCTCATGGCTCTTTCTTGTGGTT  774

Query  530  GA  531
            ||
Sbjct  775  GA  776



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25418478382


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5