BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329916
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15975.1 | Symbols: | RING/U-box superfamily protein | chr4... 684 0.0
> AT4G15975.1 | Symbols: | RING/U-box superfamily protein | chr4:9052175-9053152
FORWARD LENGTH=978
Length=978
Score = 684 bits (370), Expect = 0.0
Identities = 577/673 (86%), Gaps = 29/673 (4%)
Strand=Plus/Plus
Query 1 ATGCTCACCACCACAATCTTAATCTTATTCATTGTCATTCTTATGGTCTCTCTCCACCTC 60
||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||
Sbjct 139 ATGCTCACCACCACAATCTTAATCTTACTCATAGTGATTCTTATGGTCTCTCTCCACCTC 198
Query 61 TACTCA-CGATGGTATCTCCACCGTTCTAGCCGCTTCAACCGCACCGCCGCCGCACTTAC 119
|||| | || |||||||||| ||||||||||| |||||| |||||| |||| ||| |||
Sbjct 199 TACT-ATCGTTGGTATCTCCTCCGTTCTAGCCCCTTCAATCGCACCACCGCTGCAAGTAC 257
Query 120 CTTCTTCGCAAACCCTTCCTCCACCGCCGTCGTCACTACTAGTGGTGGCCTTAACCCCTC 179
|| ||| | | |||||||||| | | | | ||||||||||||||||||
Sbjct 258 TTTTTTCACGGATCCTTCCTCCA-------C-T--C--C---TGGTGGCCTTAACCCCTC 302
Query 180 TGTCATCAAATCTCTTCCAATTTTCACGTTCTCCGCCGCAACCGCCCaaaaaaaCGCTAT 239
|||||||||||||||||||||||||||||||||||| |||||||| ||| ||
Sbjct 303 CATCATCAAATCTCTTCCAATTTTCACGTTCTCCGCCGTAACCGCCC---TTTTCGCAAT 359
Query 240 CGAATG-TGCAGTTTGCCTCTCGGCGTTCGTGGATAACGAATCGGGTCGTGTTTTGCCCA 298
||||| | | ||||||||||||| |||| ||||| ||||||||||| ||| ||||||
Sbjct 360 GGAATGCT-CCGTTTGCCTCTCGGAGTTCAAAGATAATGAATCGGGTCGGGTTATGCCCA 418
Query 299 ATTGCAAGCACACATTTCACGTTCACTGCATCGATATGTGGTTTCATTCTCATTCCTCTT 358
|||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 419 ATTGCAAGCATACATTTCACGTTGACTGCATTGATATGTGGTTTCATTCTCATTCCTCTT 478
Query 359 GTCCTCTCTGTCGATCGCTAATCGAACCTTTCGCCGGAGGAGTGAAATCGGCGACGGAGG 418
|||||||||||||||| |||||||||||||||||||| ||||| |||||| ||| ||| |
Sbjct 479 GTCCTCTCTGTCGATCTCTAATCGAACCTTTCGCCGGTGGAGTAAAATCGACGATGGATG 538
Query 419 AAGTCGCGATTTCGATTTCTGACCCGGTTT-CTGGTGACACGAACCGCCGCGAAGGAACT 477
|||||||||||||||||||||||||||||| | ||||||||||||| | ||||||||||
Sbjct 539 AAGTCGCGATTTCGATTTCTGACCCGGTTTAC-GGTGACACGAACCATCACGAAGGAACT 597
Query 478 GAGACTTCCGGTAACCCGGACCCTGAAGATTCCCGGAGAAAACCGGCGGTGATTGAAATC 537
|||||| ||||| | ||| ||||||||||| | |||||||||||| | ||||||||||
Sbjct 598 GAGACTACCGGTGATTCGGTTCCTGAAGATTCACAGAGAAAACCGGCAGCGATTGAAATC 657
Query 538 CCACGGAGGAATCACGGAGAAATGGAGAACGATTTGACTCCAAGTCAATCATTTAGATCA 597
||| |||||||| ||||||||| ||||| |||||| ||| ||||| || |||||||||
Sbjct 658 TCACAGAGGAATCTCGGAGAAATAGAGAATGATTTGTCTCGGAGTCACTCGTTTAGATCA 717
Query 598 CCGA----TGAGCCGGGTGATATCTTTCACTCGGAATTTGAGTCGAGATC-GGAGAAGTG 652
|||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 718 CCGACCGATGAGCCGGATGATATCTTTCACTCGGAATTTGAGTCGAGATCTGGAGAAGTG 777
Query 653 CTTCTTCTTCTTC 665
|||||||||||||
Sbjct 778 CTTCTTCTTCTTC 790
Score = 82.4 bits (44), Expect = 6e-15
Identities = 56/62 (90%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 668 CGGTCTGTAGCATGCCGGTGAGGGCGTTAGATATCGAATTGGGAGGAGAAGAGACTCGTT 727
||||| ||||||||| |||| | |||||||||||||||||||||||||||||||||||
Sbjct 826 CGGTCAGTAGCATGCAAGTGACTGAGTTAGATATCGAATTGGGAGGAGAAGAGACTCGTT 885
Query 728 GA 729
||
Sbjct 886 GA 887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35364839488
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5