BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329917
Length=1578
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15960.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1448 0.0
AT4G15955.3 | Symbols: | alpha/beta-Hydrolases superfamily pro... 638 0.0
> AT4G15960.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:9045624-9047449 REVERSE LENGTH=1517
Length=1517
Score = 1448 bits (784), Expect = 0.0
Identities = 997/1100 (91%), Gaps = 13/1100 (1%)
Strand=Plus/Plus
Query 4 TTCTTGTGTAGATATCTCTCACTTTCACGATTCCAAAATCATCTTCCTCTCAGATTCCGT 63
|||||||||||| | ||||||||||||||||||| | | ||| ||||||||||| |||||
Sbjct 257 TTCTTGTGTAGAAAACTCTCACTTTCACGATTCCGACACCATTTTCCTCTCAGACTCCGT 316
Query 64 CGTTTTCTCGGGAAAAAACCAGATCCGACGGTCGATTTCTCCACATTACACGAGAATCAA 123
|||||||| ||| |||| ||| |||| || | ||||||| ||||||| ||| ||||||
Sbjct 317 CGTTTTCTTGGGGAAAACCCAAATCCAACTACCCATTTCTCTACATTACCCGACAATCAA 376
Query 124 ACAAACCGACAAGAGAAGATGTCGAGACTCGACGGCGTAGAACACAAAACCCTAAAGGTA 183
||||| |||| |||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 377 ACAAAACGACCAGAG-A-A-GTCGAGACTCGACGGCGTAGAACACAAAACCCTAAAGGTA 433
Query 184 AACGGCATAAACATGCACGTGGCGGAGAAACCTGGATCCGGATCCGGAGAAGATCCGATC 243
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 434 AATGGCATAAACATGCACGTGGCGGAGAAACCCGGATCCGGATCCGGAGAAGATCCGATC 493
Query 244 ATACTCTTTATCCACGGATTTCCGGAGCTTTGGTACACGTGGCGACACCAGATGACCGCG 303
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 494 ATACTCTTCCTCCACGGATTTCCGGAGCTTTGGTACACGTGGCGACACCAGATGGTTGCG 553
Query 304 CTTTCTTCCTTGGGATACCGTACGATCGCGCCGGATCTTAGAGGGTACGGAGACACAGAA 363
|| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 554 CTCTCTTCCTTGGGATACCGTACGATCGCGCCGGATCTTCGTGGGTACGGAGACACAGAA 613
Query 364 ACGCCGGAGAGAGTTGAAGACTACACTTACTTAAACGTGGTA-GGAGACATGGTGGCACT 422
|||| |||| ||||||||||||||||||||||||||||| | |||||| |||| |||||
Sbjct 614 GCGCCAGAGAAAGTTGAAGACTACACTTACTTAAACGTGG-ACGGAGACGTGGTCGCACT 672
Query 423 AATCGACGCCGTGACCGGCGGAGATAAGGCGGTTTTC-GTGGTTGGTCATGACTGGGGAG 481
|||||||||||||||||||||||| ||||||| |||| || |||||||||||||||||||
Sbjct 673 AATCGACGCCGTGACCGGCGGAGACAAGGCGG-TTTCTGTTGTTGGTCATGACTGGGGAG 731
Query 482 CGATGATTGCGTGGCAGTTGTGTCTGTACCGACCAGAGAAAGTCAAGGCTTTGGTTAACA 541
|||||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||
Sbjct 732 CGATGATTGCGTGGCAGTTGTGTCAATACCGACCTGAGAAAGTCAAGGCTCTGGTCAACA 791
Query 542 TGAGCGTACTCTTTTCTCCGAGGAACCCTGATCGAGTTCCGGTTCCGACACTGAGACATG 601
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 792 TGAGCGTACTCTTCTCTCCGAGGAACCCTGTTCGAGTTCCGGTTCCGACACTGAGACACG 851
Query 602 TCTTCAATAATGATTATTACATCTGCAGATTTCAGAAACCTGGAGAGATAGAGGCAGAGT 661
| ||| | |||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 852 TGTTCGGTGATGATTATTATGTCTGCAGATTTCAGAAAGCTGGAGAGATAGAGACAGAGT 911
Query 662 TCAAGAACATT-GGAACAGAGAATGTGTTGAAAGAGTTCCTCACCTACAAAACGCCTGGA 720
||||||| || ||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 912 TCAAGAA-GTTGGGAACAGAGAATGTGTTAAAAGAGTTCCTCACATACAAAACCCCTGGA 970
Query 721 CCGCTCTATCTCCCCAAAGACAAATATTTCAAACGCGCAGAAAACGCCGCGTTTGCGTTA 780
|||||| ||||||||||||||||||||||||||||| |||||||||| |||| |||||||
Sbjct 971 CCGCTCAATCTCCCCAAAGACAAATATTTCAAACGCTCAGAAAACGCTGCGTCTGCGTTA 1030
Query 781 CCACCGTGGTTAACACAAGAAGATCTCGATTATTATGTAACTAAGTACGACAAGAAAGGC 840
|||| |||||||||||||||||| || |||||||| || ||||||||||| || ||||||
Sbjct 1031 CCACTGTGGTTAACACAAGAAGACCTTGATTATTACGTCACTAAGTACGAAAACAAAGGC 1090
Query 841 TTCACCGGACCCATTAACTACTACCGCAACATTGACCGAAATTGGGAACTGACTGCACCG 900
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1091 TTCACCGGACCCATTAACTACTACCGCAACATTGACCGAAATTGGGAGCTGACTGCACCA 1150
Query 901 TGGACCGGTGCTAAGATCCATGTACCGGTGAAATTTATAGTCGGAGATCAAGATTTAACG 960
||||||||||||||||||| |||||||||||| || ||| |||||||||| ||||| |||
Sbjct 1151 TGGACCGGTGCTAAGATCCGTGTACCGGTGAAGTTCATAATCGGAGATCAGGATTTGACG 1210
Query 961 TATAATTCACCGGGAGCTAAGGAATACATTAACGGTGGCGGTTTCAATAGAGATGTACCG 1020
|| |||| ||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1211 TACAATTTTCCGGGGGCTAAGGAATACATCAACGGTGGCGGTTTCAAGAGAGATGTACCA 1270
Query 1021 TTGCTCGACGAAACCGTCGTGATCAA-GGCATTGGGACATTTCCTACACGAAGAAAACCC 1079
||| | ||||||||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct 1271 TTGTTAGACGAAACCGTCGTGCTCAAAGG-ATTGGGACATTTCCTACACGAAGAAAACCC 1329
Query 1080 TGATGTTAATGGAATCAACA 1099
||| || | | ||||||||
Sbjct 1330 TGACGTGA-TC-AATCAACA 1347
> AT4G15955.3 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:9043712-9045599 REVERSE LENGTH=1130
Length=1130
Score = 638 bits (345), Expect = 0.0
Identities = 440/483 (91%), Gaps = 18/483 (4%)
Strand=Plus/Plus
Query 1084 GTTAATGGAATCAAC-ATGCACGTCGCCGAGAAATA-CCCCTCCGTCGCCGGGAACGGTG 1141
|||||||||||| || |||||||||||||||||| | |||||||||||||||| |
Sbjct 89 GTTAATGGAATC-ACTATGCACGTCGCCGAGAAA-AGCCCCTCCGTCGCCGGG-A----- 140
Query 1142 CTTTCGACGGAGCTATACGTCCTCCGGTGATACTATTCCTCCACGGATTTCCAGAACTTT 1201
|||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 141 ------ACGGAGCTATCCGACCTCCGGTGATACTATTCCTCCACGGATTTCCAGAACTTT 194
Query 1202 GGTACACGTGGCGGCATCAGATGGTGGCACTATCTTCATTAGGTTACCGGACTATAGCAC 1261
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 195 GGTACACGTGGCGGCATCAGATGGTGGCACTATCTTCGTTAGGTTACCGGACTATAGCGC 254
Query 1262 CGGACCTACGCGGTTACGGCGACACCGACGCGCCGGCGAGCGTGGACGCGTACACAAGTC 1321
||||||| || |||||||| |||||||||||||||| ||| |||||||||||||||||||
Sbjct 255 CGGACCTTCGTGGTTACGGAGACACCGACGCGCCGGAGAGTGTGGACGCGTACACAAGTC 314
Query 1322 TCCACGTTGTTGGAGATCTGATTGGATTGATCGACGCCGTGGTTGGAGATCGCGAGAAGG 1381
||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 315 TCCACGTGGTTGGAGATCTGATTGGATTGATCGACGCCGTGGTTGGAGATCGGGAAAAGG 374
Query 1382 TGTTCGTAGTGGGACATGATTGGGGAGCAATAATCGCTTGGCATCTGTGTCTTCTTCGAC 1441
||||||||||||||||||||||||| || || |||||||||||||| |||||| ||||||
Sbjct 375 TGTTCGTAGTGGGACATGATTGGGGCGCTATTATCGCTTGGCATCTCTGTCTTTTTCGAC 434
Query 1442 CTGATAGGGTTAAAGCTCTGGTTAACATGAGTGTGGTGTTTGATCCTTGGAATCCTAAGA 1501
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 435 CGGATAGGGTTAAAGCTTTGGTTAACATGAGTGTGGTGTTTGATCCTTGGAATCCTAA-A 493
Query 1502 -GGAAACCAATCTCGTTGTTTAAATCTTTCTATGGAGATGATTACTACATCTGCAGATTT 1560
||||||||| |||| ||||||| |||||||||||||||| |||||||||||||||||
Sbjct 494 CGGAAACCAACCTCGACGTTTAAAGCTTTCTATGGAGATGACTACTACATCTGCAGATTC 553
Query 1561 CAG 1563
|||
Sbjct 554 CAG 556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77911245840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5