BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg329936

Length=564
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G15770.1 | Symbols:  | RNA binding | chr4:8978006-8978876 FO...   942    0.0  


> AT4G15770.1 | Symbols:  | RNA binding | chr4:8978006-8978876 
FORWARD LENGTH=871
Length=871

 Score =  942 bits (510),  Expect = 0.0
 Identities = 546/564 (97%), Gaps = 0/564 (0%)
 Strand=Plus/Plus

Query  1    ATGCGTCCTTTAGACGAGACAGAGACGACCGTCGTCTTCGAGAAGCTCTTCAAATTCGTC  60
            |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct  55   ATGCGTCCTTTAGACGAGACCGAGACAACCGTCGTCTTCGAGAAGCTCTTCAAATTCGTC  114

Query  61   GGCAACAACCTCAAGAAGATCGTCGAGAACCCATCAGACGAAGGACCCGAATCAACACCC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  115  GGCAACAACCTCAAGAAGATCGTCGAGAACCCATCAGACGAAGGACCCGAATCTACACCC  174

Query  121  GGAAGTTACTGCTTCCGCCTCCAGAAAAACAGAGTCTACTACGTCAGCGAGGCACTCGTG  180
            || || |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  175  GGCAGCTACTGCTTCCGCCTCCAGAAAAACAGAGTCTACTACGTCAGCGAAGCCCTCGTG  234

Query  181  AAGCGAGCCACAAACATCTCCAGAAAAAACCTAGTCTCGTTCGGAACCTGCATCGGGAAA  240
            ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct  235  AAGCGAGCCACAAACATCTCCAGGAAAAACCTAGTCTCCTTCGGAACCTGCATCGGGAAA  294

Query  241  TACACTCACGCCGGTAGTTTCCATCTGACGATTATGTCTCTCAATATCTTGGCGGCGAAT  300
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  295  TACACTCACGCCGGTAGTTTCCATCTGACGATTATGTCACTCAATATCTTGGCGGCGAAT  354

Query  301  GCTAAACACAAGGTATGGCTTAAACCCACTGCGGAGATGTCGTTTCTTTATGGGAACCAT  360
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  355  GCTAAACACAAGGTATGGCTTAAACCCACTTCGGAGATGTCGTTTCTTTATGGGAACCAT  414

Query  361  GTCTTGAAAGGTGGATTAGGGAGGATTACTGATAGTATTGTTCCTGGAGATGGTGTTGTT  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  415  GTCTTGAAAGGTGGATTAGGGAGGATTACTGATAGTATTGTTCCTGGAGATGGTGTTGTT  474

Query  421  GTCTTCTCGATGTCTGATGTTCCTTTAGGGTTTGGGATTGCGGCGAAGAGTACTCAGGAT  480
            || |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct  475  GTGTTCTCGATGTCTGATGTTCCGTTAGGGTTTGGGATTGCTGCGAAGAGTACACAGGAT  534

Query  481  TGTAGGACATTGGATCCCAATGGTATTGTTGTGCTTCATCAGGCTGATATTGGAGAGTAT  540
            ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  535  TGTAGGAAATTGGATCCTAATGGTATTGTTGTGCTTCATCAGGCTGATATTGGAGAGTAT  594

Query  541  TTGAGGGGTGAAGATGATCTTTGA  564
            ||||||||||||||||| ||||||
Sbjct  595  TTGAGGGGTGAAGATGACCTTTGA  618



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27076205233


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5