BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg329949 Length=702 Score E Sequences producing significant alignments: (Bits) Value AT4G15650.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 760 0.0 > AT4G15650.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; Has 5184 Blast hits to 3451 proteins in 562 species: Archae - 30; Bacteria - 838; Metazoa - 1576; Fungi - 798; Plants - 319; Viruses - 111; Other Eukaryotes - 1512 (source: NCBI BLink). | chr4:8922632-8923892 FORWARD LENGTH=863 Length=863 Score = 760 bits (411), Expect = 0.0 Identities = 569/642 (89%), Gaps = 23/642 (4%) Strand=Plus/Plus Query 1 ATGGGTTGTGGAAAATCGAAACATGATGTTGTTACGGGAAACACCACGAGGATCAAGAAA 60 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGGTTGTGGAAAATCAAAACACGATGTTGTTACGGGAAACACCACGAGGATCAAGAAA 60 Query 61 CCTTCGGAAGCTGAATCAGTGAAAGGAAAAGAGAGCGAAACAATTAAAAGACAAGAAAGC 120 ||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||| Sbjct 61 CCTTCGGAAGCTGAATCAGTGAAGGGAAAAGATAGCGAAGCAATTAAAAGACAAGAAAGC 120 Query 121 TGCCGGTGCC-GGAAAAAGAATGACATTTCCGACGTAGTTTCCGGTGACCAGCCGGAGAC 179 |||||||||| ||||| | || ||| |||||| ||||||| |||| |||||||||||||| Sbjct 121 TGCCGGTGCCAGGAAACA-AACGACGTTTCCGCCGTAGTTCCCGGCGACCAGCCGGAGAC 179 Query 180 CAAC-GTAGAAACCAATAGCAAGAAACCGGAGGAAAAGGAAGGTGGAGGAGATTGTAGTG 238 ||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 180 -AACCGTAGAAAACAATAGCAAGAAACCGGAGGAAAAGGAAGATGGAGGAGATTGTAGTG 238 Query 239 AA-ACGGTGGCGGTAGAGA-TGACGAATGGTGACAAACAACCGGAGGAAAATGAAACAAC 296 | | | |||||||||| | || |||||||||||||||||||||||||||| || || | Sbjct 239 AGGA-GATGGCGGTAGACAATG-CGAATGGTGACAAACAACCGGAGGAAAAAGAGACGGC 296 Query 297 AACAACTTTTCCGCCGGTGGCGGAGGTGGCG-CTGATAGTGCCGGAGAATGTTGTGACGG 355 | | | |||||| ||||| ||| ||||| | | |||||||||||||||| ||||||||| Sbjct 297 AGCCAGTTTTCCTCCGGTCACGGCGGTGGAGGC-GATAGTGCCGGAGAATATTGTGACGG 355 Query 356 AGGAGACCGTTAACGACGTGAATGAGATTGAGAGCGTTTCGCCGGTTGAAGGACAAAAGG 415 |||||||||| |||||||| || | | ||||| |||||||||||||||| |||||||| Sbjct 356 AGGAGACCGTCAACGACGT-AA--A--T-GAGAGTGTTTCGCCGGTTGAAGAACAAAAGG 409 Query 416 AAAAAATTGATATTGAAACGGTGGTAGAAGAAGAGAAAAGTATAGAGGAT-AAAAATGAT 474 |||||||||||||||| |||||||||||||| || ||| || |||||||| ||||| ||| Sbjct 410 AAAAAATTGATATTGATACGGTGGTAGAAGA-GA-AAA-GTGTAGAGGATGAAAAA-GAT 465 Query 475 GAG-GATGTTGAAAGCGAAATTGCATCTTCTGAGGTTGAAGAACCTATACCTGAGGTACA 533 | | |||||||| | |||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 466 G-GTGATGTTGATACCGAAATTGCATCTTCTGAGGTTGAAGAACCAATACCGGAGGTACA 524 Query 534 AACTCTAGTAACAACAGAATTAGAAGTTCAAGAAATTCCGACCACGGAAAATGACGAATT 593 |||| ||||||||| |||||||||| |||||||||||||||||||||| ||||||| | Sbjct 525 TACTCCAGTAACAACGGAATTAGAAGCACAAGAAATTCCGACCACGGAAACTGACGAAAT 584 Query 594 TGCAGCCACGGAAAATGATGATATCATGGCCACGGAAAATGA 635 ||||||||||||||||| |||||| |||||||||||||| Sbjct 585 CGCAGCCACGGAAAATGACGATATCGCAGCCACGGAAAATGA 626 Score = 161 bits (87), Expect = 7e-39 Identities = 102/109 (94%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 575 CCACGGAAAATGACGAAT-TTGCAGCCACGGAAAATGATGATATCATGGCCACGGAAAAT 633 ||||||||||||||| || | ||||||||||| ||||||||||||| ||||| ||||||| Sbjct 638 CCACGGAAAATGACG-ATATCGCAGCCACGGACAATGATGATATCACGGCCAGGGAAAAT 696 Query 634 GATGAAATTTCGGTTTTAAAGGATGAAGATAAAGTTGATGTTGTAGAGG 682 ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 697 GATGAAATTCCGGTTTTAAAGGATGAAGATAAAGTTGATGTTGTAGAGG 745 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34008517519 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5