BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329949
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15650.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 760 0.0
> AT4G15650.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: cellular_component unknown; EXPRESSED
IN: male gametophyte, flower, pollen tube; EXPRESSED DURING:
L mature pollen stage, M germinated pollen stage, 4 anthesis;
Has 5184 Blast hits to 3451 proteins in 562 species: Archae
- 30; Bacteria - 838; Metazoa - 1576; Fungi - 798; Plants
- 319; Viruses - 111; Other Eukaryotes - 1512 (source: NCBI
BLink). | chr4:8922632-8923892 FORWARD LENGTH=863
Length=863
Score = 760 bits (411), Expect = 0.0
Identities = 569/642 (89%), Gaps = 23/642 (4%)
Strand=Plus/Plus
Query 1 ATGGGTTGTGGAAAATCGAAACATGATGTTGTTACGGGAAACACCACGAGGATCAAGAAA 60
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTTGTGGAAAATCAAAACACGATGTTGTTACGGGAAACACCACGAGGATCAAGAAA 60
Query 61 CCTTCGGAAGCTGAATCAGTGAAAGGAAAAGAGAGCGAAACAATTAAAAGACAAGAAAGC 120
||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||
Sbjct 61 CCTTCGGAAGCTGAATCAGTGAAGGGAAAAGATAGCGAAGCAATTAAAAGACAAGAAAGC 120
Query 121 TGCCGGTGCC-GGAAAAAGAATGACATTTCCGACGTAGTTTCCGGTGACCAGCCGGAGAC 179
|||||||||| ||||| | || ||| |||||| ||||||| |||| ||||||||||||||
Sbjct 121 TGCCGGTGCCAGGAAACA-AACGACGTTTCCGCCGTAGTTCCCGGCGACCAGCCGGAGAC 179
Query 180 CAAC-GTAGAAACCAATAGCAAGAAACCGGAGGAAAAGGAAGGTGGAGGAGATTGTAGTG 238
||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 -AACCGTAGAAAACAATAGCAAGAAACCGGAGGAAAAGGAAGATGGAGGAGATTGTAGTG 238
Query 239 AA-ACGGTGGCGGTAGAGA-TGACGAATGGTGACAAACAACCGGAGGAAAATGAAACAAC 296
| | | |||||||||| | || |||||||||||||||||||||||||||| || || |
Sbjct 239 AGGA-GATGGCGGTAGACAATG-CGAATGGTGACAAACAACCGGAGGAAAAAGAGACGGC 296
Query 297 AACAACTTTTCCGCCGGTGGCGGAGGTGGCG-CTGATAGTGCCGGAGAATGTTGTGACGG 355
| | | |||||| ||||| ||| ||||| | | |||||||||||||||| |||||||||
Sbjct 297 AGCCAGTTTTCCTCCGGTCACGGCGGTGGAGGC-GATAGTGCCGGAGAATATTGTGACGG 355
Query 356 AGGAGACCGTTAACGACGTGAATGAGATTGAGAGCGTTTCGCCGGTTGAAGGACAAAAGG 415
|||||||||| |||||||| || | | ||||| |||||||||||||||| ||||||||
Sbjct 356 AGGAGACCGTCAACGACGT-AA--A--T-GAGAGTGTTTCGCCGGTTGAAGAACAAAAGG 409
Query 416 AAAAAATTGATATTGAAACGGTGGTAGAAGAAGAGAAAAGTATAGAGGAT-AAAAATGAT 474
|||||||||||||||| |||||||||||||| || ||| || |||||||| ||||| |||
Sbjct 410 AAAAAATTGATATTGATACGGTGGTAGAAGA-GA-AAA-GTGTAGAGGATGAAAAA-GAT 465
Query 475 GAG-GATGTTGAAAGCGAAATTGCATCTTCTGAGGTTGAAGAACCTATACCTGAGGTACA 533
| | |||||||| | |||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 466 G-GTGATGTTGATACCGAAATTGCATCTTCTGAGGTTGAAGAACCAATACCGGAGGTACA 524
Query 534 AACTCTAGTAACAACAGAATTAGAAGTTCAAGAAATTCCGACCACGGAAAATGACGAATT 593
|||| ||||||||| |||||||||| |||||||||||||||||||||| ||||||| |
Sbjct 525 TACTCCAGTAACAACGGAATTAGAAGCACAAGAAATTCCGACCACGGAAACTGACGAAAT 584
Query 594 TGCAGCCACGGAAAATGATGATATCATGGCCACGGAAAATGA 635
||||||||||||||||| |||||| ||||||||||||||
Sbjct 585 CGCAGCCACGGAAAATGACGATATCGCAGCCACGGAAAATGA 626
Score = 161 bits (87), Expect = 7e-39
Identities = 102/109 (94%), Gaps = 2/109 (2%)
Strand=Plus/Plus
Query 575 CCACGGAAAATGACGAAT-TTGCAGCCACGGAAAATGATGATATCATGGCCACGGAAAAT 633
||||||||||||||| || | ||||||||||| ||||||||||||| ||||| |||||||
Sbjct 638 CCACGGAAAATGACG-ATATCGCAGCCACGGACAATGATGATATCACGGCCAGGGAAAAT 696
Query 634 GATGAAATTTCGGTTTTAAAGGATGAAGATAAAGTTGATGTTGTAGAGG 682
||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 697 GATGAAATTCCGGTTTTAAAGGATGAAGATAAAGTTGATGTTGTAGAGG 745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34008517519
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5