BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg329955

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G15563.1 | Symbols:  | unknown protein; Has 36 Blast hits to...   721    0.0  


> AT4G15563.1 | Symbols:  | unknown protein; Has 36 Blast hits 
to 36 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr4:8890879-8892526 FORWARD 
LENGTH=993
Length=993

 Score =  721 bits (390),  Expect = 0.0
 Identities = 468/506 (92%), Gaps = 4/506 (1%)
 Strand=Plus/Plus

Query  1    ATGCAGCACAAGGAAATGGCATCTAGAGCTTATGAGGTGATTACATATGTGACTAA-TAG  59
            ||||| ||||||||||||||||| |||||||  |||||||||| |||||||||||| |  
Sbjct  312  ATGCAACACAAGGAAATGGCATCAAGAGCTTCCGAGGTGATTAAATATGTGACTAAGT-C  370

Query  60   TCCTGCTACGTTGTCTCTAGAGGCCGGTAAATATCTGCAGGCAGTTGAAACCATGAGCTC  119
            |||||||||||||||| ||||||| |||| ||||||||| || |||||||||||||||||
Sbjct  371  TCCTGCTACGTTGTCTTTAGAGGCAGGTATATATCTGCACGCGGTTGAAACCATGAGCTC  430

Query  120  GATGCGGTTAGGATTTCAAGATGTGGAGTTATTTCTCTTCAAACCAAACTTGAGTGTGCT  179
            ||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct  431  GATGCGGTTTGGATTTCAAGATGTGGAGTTATTTTTCTTCAAACCAAACTTAAGTGTGCT  490

Query  180  GCTCAATCTCATTGGACTCATCTACTGCATACAACACTTGAAACCGTTGCGAGATCAAAT  239
            |||||| |||||||||||||| ||||||||||||||||||||||||  |||||| ||| |
Sbjct  491  GCTCAACCTCATTGGACTCATTTACTGCATACAACACTTGAAACCGCGGCGAGAGCAAGT  550

Query  240  CTTGGATGCGCTACA-GCGATGTGGAATCTCACAGCAGCTAGTTTGGGTGAAATGGTTGA  298
            | |||||| |||| | || ||||||||||||| ||||||||||||||||||||||||| |
Sbjct  551  CGTGGATGTGCTA-AGGCAATGTGGAATCTCAGAGCAGCTAGTTTGGGTGAAATGGTTAA  609

Query  299  CGTTAGGTCGATGGTCAGGTGGGAGAAGAATGAGAGACGAAATCGTGTCGCGTCAGGTCT  358
            |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||
Sbjct  610  CGTTAGGTCGATGGTCAGGTGGGAGTCGAATGAGAGACGACATCGTGTCGCGTCAGGTCT  669

Query  359  CTCTAGTCGATGTTGTAACAGGGAAAGAAGAGACGGTTCTACGAGTGCTTCAACGAGGAG  418
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  670  CTCTAGTCGATGTTGTAACAGGGAAAGAAGAAACGGTTCTACGAGTGCTTCAACGAGGAG  729

Query  419  TTGTTCACGAAGTTCTACGCGTTTGTATCTCGACCGTTGATCTTGCGTGTACGCCTTGCA  478
            ||||||||||||||||||| ||||||||||| |||||||||||||| ||| | |||||||
Sbjct  730  TTGTTCACGAAGTTCTACGTGTTTGTATCTCAACCGTTGATCTTGCCTGTGCACCTTGCA  789

Query  479  GCAGTAGCACCATCAGAAACTACTAA  504
            ||||||||||||||||||||||||||
Sbjct  790  GCAGTAGCACCATCAGAAACTACTAA  815



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24062156413


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5