BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg329983 Length=993 Score E Sequences producing significant alignments: (Bits) Value AT4G15250.1 | Symbols: | B-box type zinc finger protein with C... 1447 0.0 AT3G21880.1 | Symbols: | B-box type zinc finger protein with C... 226 3e-58 > AT4G15250.1 | Symbols: | B-box type zinc finger protein with CCT domain | chr4:8709942-8711108 REVERSE LENGTH=995 Length=995 Score = 1447 bits (783), Expect = 0.0 Identities = 925/995 (93%), Gaps = 4/995 (0%) Strand=Plus/Plus Query 1 ATGGAGGCTCGATGTGACTATTGTGAAACCGAAAAAGCATTAATTTACTGCAAATCCGAT 60 ||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||| ||| Sbjct 3 ATGGAGGCTCGATGTGACTTTTGTGGAACCGAAAAAGCATTAATCTACTGCAAATCTGAT 62 Query 61 TTGGCTAAACTTTGTTTAAACTGTGATGTTAATATACACTCAGCGAATCCTCTGTCTCAA 120 | |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 63 TCGGCTAAACTTTGTTTAAACTGTGACGTTAATGTACACTCAGCGAATCCTCTGTCTCAA 122 Query 121 AGACACACACGGA-CTTTACTCTGCGAGAAATGTTTCTTGCAACCCACGGTAATCCACTG 179 |||||||| | || || |||||||||||||||||| ||| |||||||||| | | ||||| Sbjct 123 AGACACACGC-GATCTCTACTCTGCGAGAAATGTTCCTTACAACCCACGGCAGTACACTG 181 Query 180 TATGAACGAGAAGGTTTCTCTTTGTCAAGGATGTCAATGGACCGCAACTAACTGCACTGG 239 ||||||||| || ||||||||||| ||||||||||| |||||||| | |||||||||||| Sbjct 182 TATGAACGAAAATGTTTCTCTTTGCCAAGGATGTCAGTGGACCGCTAGTAACTGCACTGG 241 Query 240 TTTAGGACACAGACTTCAGAATCTGAATCCTTACTCTGGTTGTCCTTCTCCATCAGATTT 299 |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 242 TTTAGGACACAGACTTCAGAGTCTGAACCCTTACTCTGATTGTCCTTCTCCATCAGATTT 301 Query 300 CGCCAAGATCTGGTCTTCGATTTTAGAACCTTCTGTCTCAAATTGGGTCTCTCCATTTCC 359 || ||||||||||||||| | |||||||||||||||| ||| || ||||||||||||| | Sbjct 302 CGGCAAGATCTGGTCTTCAACTTTAGAACCTTCTGTCACAAGTTTGGTCTCTCCATTTTC 361 Query 360 TGATACCCTGCTCCAGGAATTAGACGATTGGAATGGTTCATCAACTTCCGTGATTACACA 419 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 362 TGATACCCTGCTCCAGGAATTAGACGATTGGAATGGTTCATCAACTTCCGTGGTTACACA 421 Query 420 AACTCAGAATCTTAAAGACTATTCTTCTTTCTTTTCC-ATGGAATCTAATCTTCCTAAAG 478 ||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| |||| Sbjct 422 AACTCAGAACCTTAAAGACTATTCTTCTTTC-TTTCCTATGGAATCTAATCTTCCAAAAG 480 Query 479 TGATAGAGGAGGAATGTTCTGGTTTGGATCTATGCGAAGGGATAAATTTGGATGATGCGC 538 ||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 481 TGATAGAAGAGGAATGTTCTGGTTTGGATCTATGCGAAGGGATAAACTTAGATGATGCGC 540 Query 539 CATTGAATTTCAACGCAAGCAATGATATTATCGGATGTTCATCACTTGATAATACCAAAT 598 | |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 541 CGTTGAATTTCAACGCAAGCAATGATATAATCGGATGTTCATCACTTGACAATACCAAAT 600 Query 599 GTTACCAGTATGAGGAGTCTTTTAAGGAAGAGAATAACATTGGAATTCCTTCATTACTGC 658 ||||| |||| ||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 601 GTTACGAGTACGAGGATTCTTTTAAGGAAGAGAATAACATTGGCCTTCCTTCATTACTGC 660 Query 659 TTCCTGCGTTATCCGGAAATGTTGTTCCGAGCATGTCAATTTCGATGTCAAACATCACAG 718 ||||| | |||||||| || ||||| |||| ||||||| |||||||||| ||| |||||| Sbjct 661 TTCCTACTTTATCCGGGAACGTTGTACCGAACATGTCACTTTCGATGTCTAACCTCACAG 720 Query 719 GAGAAAACAGTGCGACTGATTACCAAGATTGCGGAATTTCGCCAGGGTTTCTCATAGGAG 778 |||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 721 GAGAAAGCAATGCGACTGATTACCAAGATTGCGGAATTTCACCAGGGTTTCTCATAGGAG 780 Query 779 ATTCGCCATGGGAATCGAATGTTGAAGTCAGTTTTAATCCAAAATCAAGGGATGAGGCTA 838 |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct 781 ATTCGCCATGGGAATCGAATGTTGAAGTTAGTTTTAATCCAAAATTAAGGGATGAGGCTA 840 Query 839 AAAAGAGATACAAACAAAAGAAATCAAAGCGCATGTTTGGGAAGCAAATACGATATGCAT 898 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 841 AAAAGAGATACAAACAAAAGAAATCAAAGCGCATGTTTGGGAAGCAAATAAGATATGCAT 900 Query 899 CACGCAAAGCTAGAGCTGATACGAGAAAACGAGTGAAAGGAAGATTTGTGAAATCTGGAG 958 |||||||||| |||||||||||||||||||| || ||||| |||||||| |||||||||| Sbjct 901 CACGCAAAGCCAGAGCTGATACGAGAAAACGGGTCAAAGGGAGATTTGTAAAATCTGGAG 960 Query 959 AAACATTTGAGTATGATCCGTCACTGGTTATGTGA 993 |||| ||||||||||||||||||||||| |||||| Sbjct 961 AAACTTTTGAGTATGATCCGTCACTGGTGATGTGA 995 > AT3G21880.1 | Symbols: | B-box type zinc finger protein with CCT domain | chr3:7706748-7708093 FORWARD LENGTH=1095 Length=1095 Score = 226 bits (122), Expect = 3e-58 Identities = 270/338 (80%), Gaps = 24/338 (7%) Strand=Plus/Plus Query 13 TGTGACTATTGTGAAACCGAAAAAGCATTAATTTACTGCAAATCCGATTTGGCTAAACTT 72 |||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||| Sbjct 13 TGTGACCATTGTGCAACCTCGCAAGCATTGATTTACTGCAAATCCGATTTGGCTAAACTA 72 Query 73 TGTTTAAACTGTGATGTTAATATACACTCAGCGAATCCTCTGTCTCAAAGACACACACGG 132 || ||||||| || || || ||||||| ||||||||||||||||| || |||| ||| Sbjct 73 TGCCTAAACTGCGACGTCCATGTACACTCTGCGAATCCTCTGTCTCACAGGCACATACGC 132 Query 133 ACTTT-ACTCTGCGAGAAATGTTTCTTGCAACCCA-CGGTAATCCACTGTAT-GAACGAG 189 |||| | ||||||||||||| |||| || || | | | ||||| |||| | || |||| Sbjct 133 TCTTTGA-TCTGCGAGAAATGCTTCTCACAGCC-AGCCGCAATCCGCTGTCTCGA-CGAG 189 Query 190 AAGGTTTC-T-CTTTGTCAAGGATGTCAATGG-ACCGCAA-CTAACTGCACTG-GTTTAG 244 |||||||| | || | ||||||||||| ||| || | || | ||||| | | ||| || Sbjct 190 AAGGTTTCATACT--GCCAAGGATGTCATTGGCAC-GAAAGC-AACTGTTCGGAGTT-AG 244 Query 245 GACACAGACTTCAGAATCT-GAATCCTTACTCTGGTTGTCCTTCTCC-ATCAGATTTCGC 302 |||||||| |||||| || |||||||| |||||||||||||||||| | ||||||| Sbjct 245 GACACAGAGTTCAGAG-CTTGAATCCTTTCTCTGGTTGTCCTTCTCCTA-CAGATTTTAA 302 Query 303 CAAGA-TCTGGTCTTCGATT-TTAGAACCTTCTGTCTC 338 || || | |||||||| ||| || |||||| ||||||| Sbjct 303 CA-GAATGTGGTCTTCAATTCTT-GAACCTCCTGTCTC 338 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48626654296 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5