BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329983
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15250.1 | Symbols: | B-box type zinc finger protein with C... 1447 0.0
AT3G21880.1 | Symbols: | B-box type zinc finger protein with C... 226 3e-58
> AT4G15250.1 | Symbols: | B-box type zinc finger protein with
CCT domain | chr4:8709942-8711108 REVERSE LENGTH=995
Length=995
Score = 1447 bits (783), Expect = 0.0
Identities = 925/995 (93%), Gaps = 4/995 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGCTCGATGTGACTATTGTGAAACCGAAAAAGCATTAATTTACTGCAAATCCGAT 60
||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||| |||
Sbjct 3 ATGGAGGCTCGATGTGACTTTTGTGGAACCGAAAAAGCATTAATCTACTGCAAATCTGAT 62
Query 61 TTGGCTAAACTTTGTTTAAACTGTGATGTTAATATACACTCAGCGAATCCTCTGTCTCAA 120
| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 63 TCGGCTAAACTTTGTTTAAACTGTGACGTTAATGTACACTCAGCGAATCCTCTGTCTCAA 122
Query 121 AGACACACACGGA-CTTTACTCTGCGAGAAATGTTTCTTGCAACCCACGGTAATCCACTG 179
|||||||| | || || |||||||||||||||||| ||| |||||||||| | | |||||
Sbjct 123 AGACACACGC-GATCTCTACTCTGCGAGAAATGTTCCTTACAACCCACGGCAGTACACTG 181
Query 180 TATGAACGAGAAGGTTTCTCTTTGTCAAGGATGTCAATGGACCGCAACTAACTGCACTGG 239
||||||||| || ||||||||||| ||||||||||| |||||||| | ||||||||||||
Sbjct 182 TATGAACGAAAATGTTTCTCTTTGCCAAGGATGTCAGTGGACCGCTAGTAACTGCACTGG 241
Query 240 TTTAGGACACAGACTTCAGAATCTGAATCCTTACTCTGGTTGTCCTTCTCCATCAGATTT 299
|||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||
Sbjct 242 TTTAGGACACAGACTTCAGAGTCTGAACCCTTACTCTGATTGTCCTTCTCCATCAGATTT 301
Query 300 CGCCAAGATCTGGTCTTCGATTTTAGAACCTTCTGTCTCAAATTGGGTCTCTCCATTTCC 359
|| ||||||||||||||| | |||||||||||||||| ||| || ||||||||||||| |
Sbjct 302 CGGCAAGATCTGGTCTTCAACTTTAGAACCTTCTGTCACAAGTTTGGTCTCTCCATTTTC 361
Query 360 TGATACCCTGCTCCAGGAATTAGACGATTGGAATGGTTCATCAACTTCCGTGATTACACA 419
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 362 TGATACCCTGCTCCAGGAATTAGACGATTGGAATGGTTCATCAACTTCCGTGGTTACACA 421
Query 420 AACTCAGAATCTTAAAGACTATTCTTCTTTCTTTTCC-ATGGAATCTAATCTTCCTAAAG 478
||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 422 AACTCAGAACCTTAAAGACTATTCTTCTTTC-TTTCCTATGGAATCTAATCTTCCAAAAG 480
Query 479 TGATAGAGGAGGAATGTTCTGGTTTGGATCTATGCGAAGGGATAAATTTGGATGATGCGC 538
||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 481 TGATAGAAGAGGAATGTTCTGGTTTGGATCTATGCGAAGGGATAAACTTAGATGATGCGC 540
Query 539 CATTGAATTTCAACGCAAGCAATGATATTATCGGATGTTCATCACTTGATAATACCAAAT 598
| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 541 CGTTGAATTTCAACGCAAGCAATGATATAATCGGATGTTCATCACTTGACAATACCAAAT 600
Query 599 GTTACCAGTATGAGGAGTCTTTTAAGGAAGAGAATAACATTGGAATTCCTTCATTACTGC 658
||||| |||| ||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 GTTACGAGTACGAGGATTCTTTTAAGGAAGAGAATAACATTGGCCTTCCTTCATTACTGC 660
Query 659 TTCCTGCGTTATCCGGAAATGTTGTTCCGAGCATGTCAATTTCGATGTCAAACATCACAG 718
||||| | |||||||| || ||||| |||| ||||||| |||||||||| ||| ||||||
Sbjct 661 TTCCTACTTTATCCGGGAACGTTGTACCGAACATGTCACTTTCGATGTCTAACCTCACAG 720
Query 719 GAGAAAACAGTGCGACTGATTACCAAGATTGCGGAATTTCGCCAGGGTTTCTCATAGGAG 778
|||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 721 GAGAAAGCAATGCGACTGATTACCAAGATTGCGGAATTTCACCAGGGTTTCTCATAGGAG 780
Query 779 ATTCGCCATGGGAATCGAATGTTGAAGTCAGTTTTAATCCAAAATCAAGGGATGAGGCTA 838
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 781 ATTCGCCATGGGAATCGAATGTTGAAGTTAGTTTTAATCCAAAATTAAGGGATGAGGCTA 840
Query 839 AAAAGAGATACAAACAAAAGAAATCAAAGCGCATGTTTGGGAAGCAAATACGATATGCAT 898
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 841 AAAAGAGATACAAACAAAAGAAATCAAAGCGCATGTTTGGGAAGCAAATAAGATATGCAT 900
Query 899 CACGCAAAGCTAGAGCTGATACGAGAAAACGAGTGAAAGGAAGATTTGTGAAATCTGGAG 958
|||||||||| |||||||||||||||||||| || ||||| |||||||| ||||||||||
Sbjct 901 CACGCAAAGCCAGAGCTGATACGAGAAAACGGGTCAAAGGGAGATTTGTAAAATCTGGAG 960
Query 959 AAACATTTGAGTATGATCCGTCACTGGTTATGTGA 993
|||| ||||||||||||||||||||||| ||||||
Sbjct 961 AAACTTTTGAGTATGATCCGTCACTGGTGATGTGA 995
> AT3G21880.1 | Symbols: | B-box type zinc finger protein with
CCT domain | chr3:7706748-7708093 FORWARD LENGTH=1095
Length=1095
Score = 226 bits (122), Expect = 3e-58
Identities = 270/338 (80%), Gaps = 24/338 (7%)
Strand=Plus/Plus
Query 13 TGTGACTATTGTGAAACCGAAAAAGCATTAATTTACTGCAAATCCGATTTGGCTAAACTT 72
|||||| |||||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct 13 TGTGACCATTGTGCAACCTCGCAAGCATTGATTTACTGCAAATCCGATTTGGCTAAACTA 72
Query 73 TGTTTAAACTGTGATGTTAATATACACTCAGCGAATCCTCTGTCTCAAAGACACACACGG 132
|| ||||||| || || || ||||||| ||||||||||||||||| || |||| |||
Sbjct 73 TGCCTAAACTGCGACGTCCATGTACACTCTGCGAATCCTCTGTCTCACAGGCACATACGC 132
Query 133 ACTTT-ACTCTGCGAGAAATGTTTCTTGCAACCCA-CGGTAATCCACTGTAT-GAACGAG 189
|||| | ||||||||||||| |||| || || | | | ||||| |||| | || ||||
Sbjct 133 TCTTTGA-TCTGCGAGAAATGCTTCTCACAGCC-AGCCGCAATCCGCTGTCTCGA-CGAG 189
Query 190 AAGGTTTC-T-CTTTGTCAAGGATGTCAATGG-ACCGCAA-CTAACTGCACTG-GTTTAG 244
|||||||| | || | ||||||||||| ||| || | || | ||||| | | ||| ||
Sbjct 190 AAGGTTTCATACT--GCCAAGGATGTCATTGGCAC-GAAAGC-AACTGTTCGGAGTT-AG 244
Query 245 GACACAGACTTCAGAATCT-GAATCCTTACTCTGGTTGTCCTTCTCC-ATCAGATTTCGC 302
|||||||| |||||| || |||||||| |||||||||||||||||| | |||||||
Sbjct 245 GACACAGAGTTCAGAG-CTTGAATCCTTTCTCTGGTTGTCCTTCTCCTA-CAGATTTTAA 302
Query 303 CAAGA-TCTGGTCTTCGATT-TTAGAACCTTCTGTCTC 338
|| || | |||||||| ||| || |||||| |||||||
Sbjct 303 CA-GAATGTGGTCTTCAATTCTT-GAACCTCCTGTCTC 338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48626654296
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5