BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330033
Length=291
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14785.1 | Symbols: SCRL23 | SCR-like 23 | chr4:8495173-8495... 398 2e-110
> AT4G14785.1 | Symbols: SCRL23 | SCR-like 23 | chr4:8495173-8495620
FORWARD LENGTH=288
Length=288
Score = 398 bits (215), Expect = 2e-110
Identities = 262/285 (92%), Gaps = 2/285 (1%)
Strand=Plus/Plus
Query 1 ATGAAGTGTACTACTTTGGTTATGGTTTCTTTTGTTTTCATCTTTTTGATTCTAAGCCAT 60
|||| ||||||||||||| ||||||||||||||||| ||| || |||| ||||||||| |
Sbjct 1 ATGAGGTGTACTACTTTGATTATGGTTTCTTTTGTTGTCAGCTGTTTGCTTCTAAGCCTT 60
Query 61 GTTGAAGAGTCGGAAGCTGGAGCACCTCCCGTAGACTGTTGGACTGAGATTCTATTTCCT 120
|||||||| |||||||||||||||||||||||||| ||||||| |||||| |||||| ||
Sbjct 61 GTTGAAGAATCGGAAGCTGGAGCACCTCCCGTAGAGTGTTGGAGTGAGATCCTATTTTCT 120
Query 121 GGAAAATGCGGTTTTCATGGAAAGAAGAAATGCTACAAAGAAATGGAATCTAAGCTAAAA 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGAAAATGCGGGTTTCATGGAAAGAAGAAATGCTACAAAGAAATGGAATCTAAGCTAAAA 180
Query 181 CAACGTGTTCTTCAATGTTCATGTGAGGATGT-AAAAACAGATCCCAAAACACCTAAGGA 239
|||||||||||| ||||| |||||||||||| ||||| |||| |||| ||| |||||||
Sbjct 181 CAACGTGTTCTTAAATGTAGATGTGAGGATGTTAAAAA-AGATTCCAATACATCTAAGGA 239
Query 240 CCAACATTACTGCGGTTGTCAAAGAGAAAATCCCTATGAGTGTAA 284
| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 240 CGAACATTACTGCGGATGTCAAAGAGAAAATCCCTATGAGTGTAA 284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13421488983
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5