BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330049
Length=465
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14640.1 | Symbols: CAM8, AtCML8 | calmodulin 8 | chr4:83977... 785 0.0
AT3G22930.1 | Symbols: CML11 | calmodulin-like 11 | chr3:812408... 499 8e-141
> AT4G14640.1 | Symbols: CAM8, AtCML8 | calmodulin 8 | chr4:8397712-8400076
FORWARD LENGTH=624
Length=624
Score = 785 bits (425), Expect = 0.0
Identities = 443/452 (98%), Gaps = 0/452 (0%)
Strand=Plus/Plus
Query 14 AAGAGACAGCACTGACAAAAGATCAGATCACTGAGTTCAAAGAAGCCTTTTGTCTCTTCG 73
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 93 AAGAAACAGCACTGACAAAAGATCAGATCACTGAGTTCAAAGAAGCCTTTTGTCTCTTCG 152
Query 74 ACAAAGACGGCGACGGTTGTATAACGGTGGAAGAACTTGCAACAGTGATCCGTTCGTTGG 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 ACAAAGACGGCGACGGTTGTATAACGGTGGAAGAACTTGCAACAGTGATCCGTTCGTTGG 212
Query 134 ATCAGAATCCGACAGAACAAGAACTTCAAGATATCATCACTGAGATCGATTCTGATAGCA 193
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 213 ATCAGAATCCGACAGAACAAGAACTTCATGATATCATCACTGAGATTGATTCTGATAGCA 272
Query 194 ACGGCACCATTGAATTTGCTGAGTTTCTCAACCTCATGGCCAAAAAACTTCAGGAAAGTG 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 ACGGCACCATTGAATTTGCTGAGTTTCTCAACCTCATGGCCAAAAAACTTCAGGAAAGTG 332
Query 254 ATGCTGAGGAAGAGCTGAAAGAAGCATTCAAAGTCTTTGACAAAGACCAAAATGGTTATA 313
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 333 ATGCGGAGGAAGAGCTGAAAGAAGCATTCAAAGTCTTTGACAAAGACCAAAATGGATACA 392
Query 314 TCTCTGCCAGTGAGTTAAGTCATGTAATGATAAATCTAGGGGAAAAGCTAACAGATGAAG 373
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 393 TCTCTGCCAGTGAGTTGAGTCATGTAATGATAAATCTAGGAGAAAAGCTAACAGATGAAG 452
Query 374 AAGTTGAACAAATGATAAAGGAGGCAGATTTGGATGGTGATGGCCAAGTCAATTATGATG 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 AAGTTGAACAAATGATAAAGGAGGCAGATTTGGATGGTGATGGCCAAGTCAATTATGATG 512
Query 434 AATTTGTCAAGATGATGATCAACATTGGCTGA 465
||||||||||||||||||||||||||| ||||
Sbjct 513 AATTTGTCAAGATGATGATCAACATTGACTGA 544
> AT3G22930.1 | Symbols: CML11 | calmodulin-like 11 | chr3:8124083-8125931
REVERSE LENGTH=821
Length=821
Score = 499 bits (270), Expect = 8e-141
Identities = 378/431 (88%), Gaps = 4/431 (1%)
Strand=Plus/Plus
Query 24 ACTGACAAAAGATCAGATCACT-GAGTTCAAAGAAGCCTTTTGTCTCTTCGACAAAGACG 82
|||||| |||| ||||| | | ||||||||||| || |||||||| ||||||||||| |
Sbjct 177 ACTGACGCAAGAACAGAT-AATGGAGTTCAAAGAGGCTTTTTGTCTATTCGACAAAGATG 235
Query 83 GCGACGGTTGTATAAC-GGTGGAAGAACTTGCAACAGTGATCCGTTCGTTGGATCAGAAT 141
| || || || || || | | || |||||||| || |||||||| || |||||||||||
Sbjct 236 GTGATGGATGCATCACTGCT-GATGAACTTGCCACTGTGATCCGCTCATTGGATCAGAAC 294
Query 142 CCGACAGAACAAGAACTTCAAGATATCATCACTGAGATCGATTCTGATAGCAACGGCACC 201
|| || || ||||||||||||||||| |||||||||||||| || ||| |||||||||||
Sbjct 295 CCTACCGAGCAAGAACTTCAAGATATGATCACTGAGATCGACTCCGATGGCAACGGCACC 354
Query 202 ATTGAATTTGCTGAGTTTCTCAACCTCATGGCCAAAAAACTTCAGGAAAGTGATGCTGAG 261
|| |||||| | |||||||||||||||||||| || |||| ||||||| |||||| ||
Sbjct 355 ATCGAATTTTCGGAGTTTCTCAACCTCATGGCTAACCAACTCCAGGAAACTGATGCAGAT 414
Query 262 GAAGAGCTGAAAGAAGCATTCAAAGTCTTTGACAAAGACCAAAATGGTTATATCTCTGCC 321
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 415 GAAGAGCTGAAAGAAGCATTCAAAGTGTTTGACAAAGACCAAAATGGTTACATCTCTGCC 474
Query 322 AGTGAGTTAAGTCATGTAATGATAAATCTAGGGGAAAAGCTAACAGATGAAGAAGTTGAA 381
|||||||| || ||||| ||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct 475 AGTGAGTTGAGGCATGTGATGATTAATCTTGGGGAGAAGCTAACAGATGAAGAGGTTGAT 534
Query 382 CAAATGATAAAGGAGGCAGATTTGGATGGTGATGGCCAAGTCAATTATGATGAATTTGTC 441
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CAAATGATAAAAGAGGCAGATTTGGATGGTGATGGCCAAGTCAATTATGATGAATTTGTC 594
Query 442 AAGATGATGAT 452
| |||||||||
Sbjct 595 AGGATGATGAT 605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22103024680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5