BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330052
Length=2166
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14610.1 | Symbols: | pseudogene, disease resistance protei... 1275 0.0
AT1G12220.1 | Symbols: RPS5 | Disease resistance protein (CC-NB... 230 6e-59
> AT4G14610.1 | Symbols: | pseudogene, disease resistance protein
(CC-NBS-LRR class), putative, domain signature CC-NBS-LRR
exists, suggestive of a disease resistance protein.; blastp
match of 45% identity and 2.2e-162 P-value to GP|24461866|gb|AAN62353.1|AF506028_20|AF506028
NBS-LRR type disease resistance
protein {Poncirus trifoliata} | chr4:8380848-8383496
REVERSE LENGTH=2649
Length=2649
Score = 1275 bits (690), Expect = 0.0
Identities = 798/851 (94%), Gaps = 4/851 (0%)
Strand=Plus/Plus
Query 200 AGGTTGAGATAAAGAGGTTGTGTTTTTGTGGGTTTTGCTCCAAAAGTTTTGGAAAGAGCT 259
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 AGGTTGAGATAGAGAGGTTGTGTTTTTGTGGGTTTTGCTCCAAAAGTTTTGGAAAGAGCT 340
Query 260 ATGGTTATGGGAAAATGGTTAGCTTGATGTTGAAGGAAGTTGAGAGTCTCTCTTCTCATG 319
|| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||
Sbjct 341 ATCATTATGGGAAAATGGTTAGCGTGATGTTGAAGGAAGTTGAGAATCTCTCTTCTCGTG 400
Query 320 GAGAATTTGATGTGGTGACTGAGGTTGCTATGGTAGTTCAAGTGGAGGAGATGCCTATTC 379
||| |||||||||||||||||||| | |||||| |||||| ||||||||||||||||
Sbjct 401 GAGTATTTGATGTGGTGACTGAGGAAAATCTGGTAGCTCAAGTTGAGGAGATGCCTATTC 460
Query 380 AATCTGTAGTTGTTGGTCAAGAGACAATGCTTGAAAGGGTGTGGAACTCTCTTATGAAAG 439
|||| ||||||||||||||||||||||||||||||||| |||||| |||| |||||||
Sbjct 461 AATCCACAGTTGTTGGTCAAGAGACAATGCTTGAAAGGGTTTGGAACACTCTCATGAAAG 520
Query 440 ATGGATTCAAGATTATGGGTTTGTATGGAATGGGTGGAGTGGGGAAAACTACGCTTCTCA 499
||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||| |
Sbjct 521 ATGGATTCAAGATCATGGGTTTATATGGAATGGGTGGAGTGGGAAAAACCACGCTTCTTA 580
Query 500 CGCAAATCAACAATAAGTTTTCTGAAATGGATTGTGGATTTGATATTGTGATGTGGGTTG 559
||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 581 CGCAAATCAACAAGAAGTTTTCTGAAACAGATGGTGGATTTGATATTGTGATGTGGGTTG 640
Query 560 TCGTGTCTAAAA-CTCTAGAGATCTATAGGATTCAAGAAGATATTGCAAAAAGACTTGGT 618
| |||||||||| ||| |||||||||||||||||||||||| |||||||||||||| |||
Sbjct 641 TTGTGTCTAAAACCTC-AGAGATCTATAGGATTCAAGAAGACATTGCAAAAAGACTAGGT 699
Query 619 CTTTCGGGTGAGGAGTGGGACaaaaaaaCCGAAAACAAGAGAGCCGTTGACATACACAAT 678
||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 700 CTTACGGGCGAGGAGTGGGACAAAAAAAACGAAAACAAGAGAGCCGTTGACATACACAAT 759
Query 679 GTCCTTAGGAGAAAGAAATTTGTGTTATTGTTGGATGATATATGGGAGAAGGTGAACTTA 738
|||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 760 GTCCTTAGGAGACATAAATTTGTGTTATTGTTGGATGATATATGGGAGAAAGTGAACTTA 819
Query 739 GAATCGGTTCGAGTACCGTATCCAAGTAGAGAAAATGGAAGCATAGTAGCATTTACCACT 798
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 GAATTGGTTGGAGTACCGTATCCAAGTAGAGAAAATGGAAGCATAGTAGCATTTACCACC 879
Query 799 CGTTCTCGAGATGTTTGTGGGCGTATGGGAGTCGATGACCTGATGAAAGTTAGTTGTTTG 858
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 880 CGTTCTCGAGATGTTTGTGGGCGTATGGGAGTCGATGACCCGATGCAAGTTAGTTGTTTG 939
Query 859 GAACCTGAAGAAGCTTGGGATTTGTTTC-AAACGAAAGTAGGAGAAAACACTTTGAAAAG 917
||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 940 GAACCTGAAGATGCTTGGGATTTGTTTCAAAAC-AAAGTAGGAGAAAACACTTTGAAAAG 998
Query 918 CCATCCGGACATTCCTGAACTTGCAAAACAAGTCGCTGAAAAATGTCGTGGTCTGCCACT 977
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 999 CCATCCGGATATTCCTGAACTTGCAAAACAAGTCGCTGAAAAATGTCGTGGTCTACCATT 1058
Query 978 AGCGCTCAATGTCATTGGAGAAACTATGGCATGCAAAAGCACAGTTCAAGAATGGCGTCA 1037
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 AGCACTTAATGTCATTGGAGAAACTATGGCATGCAAAAGCACAGTTCAAGAATGGCGTCA 1118
Query 1038 CGCGATTGATG 1048
|||||||||||
Sbjct 1119 CGCGATTGATG 1129
Score = 885 bits (479), Expect = 0.0
Identities = 536/564 (95%), Gaps = 2/564 (0%)
Strand=Plus/Plus
Query 1595 AGCTTATAGAGGTTGAGGAAGAATCATTCAAAATATTAACTGTTCCAAGCATGTGTAATA 1654
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 2075 AGCTTATAGAGGTTGAGGAAGAATCTTTCAAAATATTAACTTTTCCAAGCATGTGTAATA 2134
Query 1655 TCCGTCGAATTGGCATATGGAAGTGTGGAATGAAGGAGATAAAGGTCGAGATGAGAACAT 1714
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2135 TCCGTCGAATTGGCATATGGAAGTGTGGAATGAAGGAGATAAAAGTCGAGATGAGAACAT 2194
Query 1715 CATCATGCTTCTCTAGCCTTTCCAAAGTAGTTATAGGACAATGCAATGGTCTAAAGGATT 1774
||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| |
Sbjct 2195 CATCATGCTTCTCTAGCCTCTCCAAAGTCGTTATAGGACAATGTGATGGTCTAAAGGAGT 2254
Query 1775 TGACATGGCTATTGTTTGCTCCAAACCTTACTTATCTATATGTTCGTTTCGCAGAGCAAC 1834
||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 2255 TGACATGGCTATTGTTTGCTCCAAACCTTACTTATCTCGACGCTCGTTTCGCAGAGCAAC 2314
Query 1835 TAGAGGATATAATCAGTGAAGAAAAAGCTGCAAGTTTTACAGACGAGAATGCAAATATTA 1894
||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||
Sbjct 2315 TAGAGGATATAATCAGTGAAGAAAAAGCTGCAAGTGTTACGGACGAGAATGCAAGTATTA 2374
Query 1895 TCATTCCTTTTCAAAAACTAGAATGTCTTAGCTTATCTGATTTACCTAAGCTGAAGAGCA 1954
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2375 TCATTCCTTTTCAAAAACTAGAATGTCTTAGCTTATCTGATTTACCTAAGCTAAAGAGCA 2434
Query 1955 TCTACTGGACACCCCTGTCTTTTCCACGTCTGAGTGAGCTCGCTGTGCAAGAACATTGCC 2014
|||||||| |||| ||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 2435 TCTACTGGTCACCATTGTCTTTTCCACGTCTGAGTGAGCTTGCAGTGCAAGAACATTGTC 2494
Query 2015 CAAAGCTGAAAAAGCTTCCATTGAATTCCAAGAGTGGAACTGC-GGATGTAGAACTTGTC 2073
||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 2495 CAAAGCTGAAAAAGCTTCCATTGAACTCCAAGAGTGGAACTGCAGG-TGTAGAACTTGTC 2553
Query 2074 ATAAAATACGGCGAAAACAAATGGTTGGAAGGTGTTGAATGGGAAGACAAAGCCACTGAA 2133
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2554 GTAAAATACGGCGAAAACAAATGGTTAGAAGGTGTTGAATGGGAAGACAAAGCCACTGAA 2613
Query 2134 CTCCGGTTTTTGGCTACCTGCAAA 2157
|| |||||||||||||||||||||
Sbjct 2614 CTACGGTTTTTGGCTACCTGCAAA 2637
Score = 532 bits (288), Expect = 4e-150
Identities = 340/366 (93%), Gaps = 0/366 (0%)
Strand=Plus/Plus
Query 1041 GATTGATGAAGGATGGAAGAAAGCAGAAGTGAAAATGCATGATGTGGTTCGTGAGATGGC 1100
||| || |||| |||||||||| | ||||||||||||||||| |||||||||||||||||
Sbjct 1396 GATGGAGGAAGAATGGAAGAAAACGGAAGTGAAAATGCATGACGTGGTTCGTGAGATGGC 1455
Query 1101 TCTATGGATATCATCTGATCTTGGAAAGCACAAAGATCAATGTATTGTGCGAGCCGGTGT 1160
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1456 TCTATGGATATCATCTGATCTTGGAAAGCATAAAGATCAATGCATTGTGCGAGCCGGTGT 1515
Query 1161 TGGGTTACATGCAGTACCGGAAGTGAAGAATTGGAGAGCTGTGAGAAGGCTGTCGTTGAT 1220
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1516 TGGGTTACATGCAGTACCGGAAGTGAAGAACTGGAGAGCTGTGAGAAGAATGTCGTTGAT 1575
Query 1221 GAAAACTGAGCTTCAAAACATATTGGGTTGTCCTACATGTCCTGAACTTACGACTCTCCT 1280
||||| ||||||| |||| || |||||||| |||||||||||| ||||||| ||||||||
Sbjct 1576 GAAAAATGAGCTTGAAAAGATTTTGGGTTGCCCTACATGTCCTCAACTTACAACTCTCCT 1635
Query 1281 CCTCCAAGAAAACCACAAACTGGTAAATATTTCCGGAGAATTCTTTCGATTTATGCCTAA 1340
||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1636 CCTCCAAAAAAACCACAAATTGGTAAATATTTCCGGAGAATTCTTTCGATTCATGCCTAA 1695
Query 1341 CCTTGTAGTATTGGATTTATCATGGAGTAGTAGTCTCATTGGATTACCAAACCAAATATC 1400
|||||| ||||||||||||||||||| ||||||||||| |||||||||||| |||||||
Sbjct 1696 CCTTGTCGTATTGGATTTATCATGGAATAGTAGTCTCACTGGATTACCAAAGAAAATATC 1755
Query 1401 AGAGTT 1406
||||||
Sbjct 1756 AGAGTT 1761
Score = 274 bits (148), Expect = 3e-72
Identities = 175/188 (93%), Gaps = 1/188 (1%)
Strand=Plus/Plus
Query 1407 GTTGAAAAAACTAATACATTTGAATTTGGAGTCCATGAAGAGACTGGAAAGTATTGCCGG 1466
||||||| ||||||||||| |||||||||||||||||||||| |||| |||| ||| ||
Sbjct 1828 GTTGAAACAACTAATACATCTGAATTTGGAGTCCATGAAGAGTTTGGAGAGTA-TGCTGG 1886
Query 1467 AGTATCTAAGTTGTTGAGTTTGAGGACATTGAGACTACAAAAGTCCAAAAAGGCTGTAGA 1526
|||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||
Sbjct 1887 GGTATCTAAGTTGTTGAGTTTGAAGACACTGAGACTACAAAAGTCCAAAAAGGCTCTAGA 1946
Query 1527 TGTGAACTCAGCGAAGGAGCTACAACTCTTAGAACATTTAGAAGTTCTAACCATAGATAT 1586
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1947 TGTGAACTCAGCGAAGGAGCTACAACTCTTAGAACATATAGAAGTTCTAACCATAGATAT 2006
Query 1587 CTTCTCAA 1594
||| ||||
Sbjct 2007 CTTTTCAA 2014
Score = 231 bits (125), Expect = 2e-59
Identities = 165/184 (90%), Gaps = 4/184 (2%)
Strand=Plus/Plus
Query 22 TTTGTGAATCAGTTCTCTCAATGGTTATGCGTTAGAAGAAG-TTATATTCACAGCCTTAC 80
||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||||| |
Sbjct 40 TTTGTGAATCAGTTCTCTCAATGGTTATGCGTTAGAA-AAGGTTACATTCATAGCCTTCC 98
Query 81 CGAGAATCTAGCAGCTTTGCATAAAGCCATGGAAGTGCTCAAGACAAAAGAA-GATGATG 139
|||||||||||||||| | || |||||||| ||||| ||||||||||| | | |||||||
Sbjct 99 CGAGAATCTAGCAGCTCTACAAAAAGCCATTGAAGTTCTCAAGACAAA-GCACGATGATG 157
Query 140 TGAAAAGAAGGGTTGATAGAGAAGAGTTTATAGGGCGTCGTCAAAGGATTTCTCAAGTTC 199
||||||||||||| |||| |||||| ||| ||||||||||||| ||| ||||||||||||
Sbjct 158 TGAAAAGAAGGGTCGATAAAGAAGAATTTCTAGGGCGTCGTCATAGGCTTTCTCAAGTTC 217
Query 200 AGGT 203
||||
Sbjct 218 AGGT 221
> AT1G12220.1 | Symbols: RPS5 | Disease resistance protein (CC-NBS-LRR
class) family | chr1:4144935-4147817 FORWARD LENGTH=2883
Length=2883
Score = 230 bits (124), Expect = 6e-59
Identities = 290/367 (79%), Gaps = 23/367 (6%)
Strand=Plus/Plus
Query 1048 GAAGGATGGAAGAAAGCAGAA-GTGAAAATGCATGATGTGGTTCGTGAGATGGCTCTATG 1106
|||| | |||| ||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 1478 GAAGAAAGGAACAAATCA-AACGTGAAAATGCATGATGTGGTTCGTGAGATGGCTCTATG 1536
Query 1107 GATATCATCTGATCTTGGAAAGCACAAAG-ATCAATGTATTGTGCGAGCCGGTGTTGGGT 1165
||||||||| |||||||| ||||| |||| | |||||||||||||||| ||||||||||
Sbjct 1537 GATATCATCCGATCTTGGGAAGCA-AAAGGAGAAATGTATTGTGCGAGCTGGTGTTGGGT 1595
Query 1166 TACATGCAGTACCGGAAGTGAAGAATTGGAG-AGCTGTGAGAAGGCTGTCGTTGATGAA- 1223
||| || |||||| |||| ||| |||||| | ||||||||| | | || ||||||||
Sbjct 1596 TACGTGAAGTACCAAAAGTCAAGGATTGGAACA-CTGTGAGAAAGATTTCTTTGATGAAT 1654
Query 1224 AACTGAGCTTCAAAACATATTGGGTTGTC-CTACATGTCCTGAACTTACGACTCTCCTCC 1282
|| |||| || || | ||||| | ||| | | ||| ||| |||||| ||||| | |
Sbjct 1655 AA-TGAGATTGAAGAGATATTTGACAGTCACGAG-TGTGCTGCACTTACAACTCTATTTC 1712
Query 1283 TCCAAGAA-AACCACAAACTGGTAAATATTTCCGGA-GAATTCTTTCGATTTATGCCTAA 1340
||||| || ||| || ||||||| || || || ||||||||||||| ||||||| |
Sbjct 1713 TCCAA-AAGAACGACG---TGGTAAAGATCTC-GGCTGAATTCTTTCGATGTATGCCTCA 1767
Query 1341 CCTTGTAGTATTGGATTTATCATG-GAGT-AGTAGTCTCATTGGATTACCA-AACCAAAT 1397
|| || || || ||| ||||| | || | || ||||| | || ||||||| || ||||
Sbjct 1768 TCTGGTGGTTTTAGATCTATCA-GAGAATCAG-AGTCTTAATGAATTACCAGAAG-AAAT 1824
Query 1398 ATCAGAG 1404
|||||||
Sbjct 1825 ATCAGAG 1831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107429166300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5